Detail information of GWHGAAEX012740/evm.TU.scaffold_45.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428206159|ref|YP_007090512.1|7.00E-22WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
KOGKOG02831.00E-123WD40 repeat-containing protein
nrgi|743817826|ref|XP_010931045.1|0PREDICTED: lissencephaly-1 homolog 1-like [Elaeis guineensis]
Swissprottr|P93340|GBLP_NICPL2.00E-12Guanine nucleotide-binding protein subunit beta-like protein
trEMBLtr|M0RIK9|M0RIK9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15840_001}
TAIRAT5G535001.00E-123Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005242321874236313-
Transcript Sequence

Network for GWHGAAEX012740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4AP2/ERF-ERF_EAR_family AP2/ERF-ERF_EAR_family
GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0016491 oxidoreductase activity GOslim:molecular_function
GO:0016758 transferase activity, transferring hexosyl groups GOslim:molecular_function
GO:0043565 sequence-specific DNA binding GOslim:molecular_function
map00561 Glycerolipid metabolism
map04923 Regulation of lipolysis in adipocytes
Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family
Transcription factor LOB Family Transcription factor LOB Family
Transcription factor MYB Family Transcription factor MYB Family
Transcription factor NAC Family Transcription factor NAC Family
Transcription factor Tify Family Transcription factor Tify Family
Transcription factor WRKY Family Transcription factor WRKY Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402512820.00022
PF00400.31WD403363711.10E-05
PF00400.31WD403774130.00021
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.090
SRR2545915Juvenile tuber22.710
SRP108465SRR5643513five period of Gastrodia elata22.240
SRR5643514five period of Gastrodia elata19.040
SRR5643515five period of Gastrodia elata32.910
SRR5643524five period of Gastrodia elata20.530
SRR5643525five period of Gastrodia elata12.180
SRR5643528five period of Gastrodia elata20.710
SRR5643658five period of Gastrodia elata7.250
SRR5643659five period of Gastrodia elata35.220
SRR5643660five period of Gastrodia elata25.620
SRR5643661five period of Gastrodia elata36.190
SRR5643662five period of Gastrodia elata33.680
SRR5643663five period of Gastrodia elata32.920
SRR5643664five period of Gastrodia elata47.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.540
SRR6049655Rhizomagastrodiae_C368-T10_good_111.590
SRR6049656Rhizomagastrodiae_C368-T07_good_120.660
SRR6049657Rhizomagastrodiae_C368-T07_good_113.730
SRR6049658Rhizomagastrodiae_C368-T04_good_114.260
SRR6049659Rhizomagastrodiae_C368-T04_good_114.670
SRR6049660Rhizomagastrodiae_C368-T01_good_112.250
SRR6049661Rhizomagastrodiae_C368-T04_good_112.780
SRR6049662Rhizomagastrodiae_C368-T01_good_115.990
SRR6049663Rhizomagastrodiae_C368-T01_good_115.570
SRR6049664Rhizomagastrodiae_C368-T10_good_127.760
SRR6049665Rhizomagastrodiae_C368-T10_good_127.760
SRP279888GastroGastrodia elata tuber 12.26
JuvenJuvenile tuber9.69
Mother_GastroMother tuber of Gastrodia elata 64.30
Mother_JuvenMother tuber of Juvenile 63.22