Detail information of GWHGAAEX011397/evm.TU.scaffold_37.157


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|407463289|ref|YP_006774606.1|2.00E-28thymidylate kinase [Candidatus Nitrosopumilus koreensis AR1]
KOGKOG33271.00E-101Thymidylate kinase/adenylate kinase
nrgi|672157604|ref|XP_008798520.1|5.02E-111PREDICTED: thymidylate kinase isoform X3 [Phoenix dactylifera]
trEMBLtr|A0A072TF88|A0A072TF88_MEDTR4.00E-106P-loop nucleoside triphosphate hydrolase superfamily protein {ECO:0000313|EMBL:KEH16219.1}
TAIRAT5G594401.00E-101P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004349696004973856+
Transcript Sequence

Network for GWHGAAEX011397

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02223.16Thymidylate_kin151918.60E-43
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00943tmk, DTYMK Metabolic pathways map01100
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006233Biological ProcessdTDP biosynthetic process
GO:0005524Molecular FunctionATP binding
GO:0004798Molecular Functionthymidylate kinase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.840
SRR2545915Juvenile tuber38.370
SRP108465SRR5643513five period of Gastrodia elata32.550
SRR5643514five period of Gastrodia elata37.280
SRR5643515five period of Gastrodia elata30.440
SRR5643524five period of Gastrodia elata32.080
SRR5643525five period of Gastrodia elata53.780
SRR5643528five period of Gastrodia elata52.200
SRR5643658five period of Gastrodia elata60.070
SRR5643659five period of Gastrodia elata37.450
SRR5643660five period of Gastrodia elata41.300
SRR5643661five period of Gastrodia elata35.360
SRR5643662five period of Gastrodia elata42.490
SRR5643663five period of Gastrodia elata41.430
SRR5643664five period of Gastrodia elata38.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.240
SRR6049655Rhizomagastrodiae_C368-T10_good_135.850
SRR6049656Rhizomagastrodiae_C368-T07_good_129.050
SRR6049657Rhizomagastrodiae_C368-T07_good_129.700
SRR6049658Rhizomagastrodiae_C368-T04_good_134.740
SRR6049659Rhizomagastrodiae_C368-T04_good_129.400
SRR6049660Rhizomagastrodiae_C368-T01_good_127.410
SRR6049661Rhizomagastrodiae_C368-T04_good_126.430
SRR6049662Rhizomagastrodiae_C368-T01_good_132.840
SRR6049663Rhizomagastrodiae_C368-T01_good_131.080
SRR6049664Rhizomagastrodiae_C368-T10_good_136.330
SRR6049665Rhizomagastrodiae_C368-T10_good_136.330
SRP279888GastroGastrodia elata tuber 45.29
JuvenJuvenile tuber34.09
Mother_GastroMother tuber of Gastrodia elata 48.50
Mother_JuvenMother tuber of Juvenile 36.92