Detail information of GWHGAAEX010494/evm.TU.scaffold_3.132
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37523751|ref|NP_927128.1| | 2.00E-32 | chloride channel protein [Gloeobacter violaceus PCC 7421] |
| KOG | KOG0474 | 0 | Cl- channel CLC-7 and related proteins (CLC superfamily) |
| nr | gi|743815993|ref|XP_010930514.1| | 0 | PREDICTED: chloride channel protein CLC-c-like [Elaeis guineensis] |
| Swissprot | tr|Q96282|CLCC_ARATH | 0 | Chloride channel protein CLC-c |
| trEMBL | tr|J3LY69|J3LY69_ORYBR | 0 | Chloride channel protein {ECO:0000256|RuleBase:RU361221} |
| TAIR | AT5G49890 | 0 | chloride channel C |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000002 | 8971060 | 9000922 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010494
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 | AP2/ERF-ERF_EAR_family AP2/ERF-ERF_EAR_family GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function GO:0004672 protein kinase activity GOslim:molecular_function GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006468 protein phosphorylation GOslim:biological_process GO:0016491 oxidoreductase activity GOslim:molecular_function GO:0016758 transferase activity, transferring hexosyl groups GOslim:molecular_function GO:0043565 sequence-specific DNA binding GOslim:molecular_function map00561 Glycerolipid metabolism map04923 Regulation of lipolysis in adipocytes Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family Transcription factor LOB Family Transcription factor LOB Family Transcription factor MYB Family Transcription factor MYB Family Transcription factor NAC Family Transcription factor NAC Family Transcription factor Tify Family Transcription factor Tify Family Transcription factor WRKY Family Transcription factor WRKY Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00654.19 | Voltage_CLC | 148 | 563 | 5.10E-89 |
| PF00571.27 | CBS | 596 | 655 | 0.0067 |
| PF00571.27 | CBS | 711 | 761 | 0.00027 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006821 | Biological Process | chloride transport |
| GO:0005247 | Molecular Function | voltage-gated chloride channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.610 |
| SRR2545915 | Juvenile tuber | 4.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.480 |
| SRR5643514 | five period of Gastrodia elata | 9.390 | |
| SRR5643515 | five period of Gastrodia elata | 6.890 | |
| SRR5643524 | five period of Gastrodia elata | 8.950 | |
| SRR5643525 | five period of Gastrodia elata | 14.970 | |
| SRR5643528 | five period of Gastrodia elata | 24.070 | |
| SRR5643658 | five period of Gastrodia elata | 15.450 | |
| SRR5643659 | five period of Gastrodia elata | 4.100 | |
| SRR5643660 | five period of Gastrodia elata | 4.400 | |
| SRR5643661 | five period of Gastrodia elata | 3.710 | |
| SRR5643662 | five period of Gastrodia elata | 2.410 | |
| SRR5643663 | five period of Gastrodia elata | 3.200 | |
| SRR5643664 | five period of Gastrodia elata | 2.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.98 |
| Juven | Juvenile tuber | 5.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.38 | |
| Mother_Juven | Mother tuber of Juvenile | 17.66 |