Detail information of GWHGAAEX009080/evm.TU.scaffold_232.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743851130|ref|XP_010940059.1|9.71E-132PREDICTED: uncharacterized protein LOC105058735 [Elaeis guineensis]
trEMBLtr|D7TI86|D7TI86_VITVI2.00E-119Putative uncharacterized protein {ECO:0000313|EMBL:CBI29962.3}
TAIRAT3G119504.00E-103TRAF-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000240731950737160-
Transcript Sequence

Network for GWHGAAEX009080

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02176.17zf-TRAF2112691.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.200
SRR2545915Juvenile tuber7.100
SRP108465SRR5643513five period of Gastrodia elata10.150
SRR5643514five period of Gastrodia elata9.810
SRR5643515five period of Gastrodia elata11.270
SRR5643524five period of Gastrodia elata9.300
SRR5643525five period of Gastrodia elata14.320
SRR5643528five period of Gastrodia elata23.530
SRR5643658five period of Gastrodia elata15.350
SRR5643659five period of Gastrodia elata9.420
SRR5643660five period of Gastrodia elata8.490
SRR5643661five period of Gastrodia elata9.290
SRR5643662five period of Gastrodia elata10.040
SRR5643663five period of Gastrodia elata8.810
SRR5643664five period of Gastrodia elata9.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.070
SRR6049655Rhizomagastrodiae_C368-T10_good_19.670
SRR6049656Rhizomagastrodiae_C368-T07_good_110.590
SRR6049657Rhizomagastrodiae_C368-T07_good_18.480
SRR6049658Rhizomagastrodiae_C368-T04_good_18.190
SRR6049659Rhizomagastrodiae_C368-T04_good_17.810
SRR6049660Rhizomagastrodiae_C368-T01_good_19.010
SRR6049661Rhizomagastrodiae_C368-T04_good_17.830
SRR6049662Rhizomagastrodiae_C368-T01_good_110.650
SRR6049663Rhizomagastrodiae_C368-T01_good_112.140
SRR6049664Rhizomagastrodiae_C368-T10_good_112.670
SRR6049665Rhizomagastrodiae_C368-T10_good_112.670
SRP279888GastroGastrodia elata tuber 8.34
JuvenJuvenile tuber7.93
Mother_GastroMother tuber of Gastrodia elata 12.22
Mother_JuvenMother tuber of Juvenile 9.92