Detail information of GWHGAAEX007601/evm.TU.scaffold_20.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557828985|ref|YP_008801702.1| | 7.00E-160 | S-adenosylmethionine synthetase [Exiguobacterium sp. MH3] |
| KOG | KOG1506 | 0 | S-adenosylmethionine synthetase |
| nr | gi|695010639|ref|XP_009391996.1| | 0 | PREDICTED: S-adenosylmethionine synthase [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|A7Q0V4|METK5_VITVI | 0 | S-adenosylmethionine synthase 5 |
| trEMBL | tr|M0SE45|M0SE45_MUSAM | 0 | S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541} |
| TAIR | AT1G02500 | 0 | S-adenosylmethionine synthetase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 5270147 | 5273019 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007601
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 | AP2/ERF-ERF_EAR_family AP2/ERF-ERF_EAR_family GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function GO:0004672 protein kinase activity GOslim:molecular_function GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006468 protein phosphorylation GOslim:biological_process GO:0016491 oxidoreductase activity GOslim:molecular_function GO:0016758 transferase activity, transferring hexosyl groups GOslim:molecular_function GO:0043565 sequence-specific DNA binding GOslim:molecular_function map00561 Glycerolipid metabolism map04923 Regulation of lipolysis in adipocytes Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family Transcription factor LOB Family Transcription factor LOB Family Transcription factor MYB Family Transcription factor MYB Family Transcription factor NAC Family Transcription factor NAC Family Transcription factor Tify Family Transcription factor Tify Family Transcription factor WRKY Family Transcription factor WRKY Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00438.19 | S-AdoMet_synt_N | 5 | 102 | 5.50E-43 |
| PF02772.15 | S-AdoMet_synt_M | 118 | 239 | 1.30E-45 |
| PF02773.15 | S-AdoMet_synt_C | 241 | 382 | 3.20E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00789 | metK | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006556 | Biological Process | S-adenosylmethionine biosynthetic process |
| GO:0004478 | Molecular Function | methionine adenosyltransferase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 439.880 |
| SRR2545915 | Juvenile tuber | 262.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 395.720 |
| SRR5643514 | five period of Gastrodia elata | 156.790 | |
| SRR5643515 | five period of Gastrodia elata | 765.350 | |
| SRR5643524 | five period of Gastrodia elata | 288.360 | |
| SRR5643525 | five period of Gastrodia elata | 1033.640 | |
| SRR5643528 | five period of Gastrodia elata | 1750.730 | |
| SRR5643658 | five period of Gastrodia elata | 823.630 | |
| SRR5643659 | five period of Gastrodia elata | 573.000 | |
| SRR5643660 | five period of Gastrodia elata | 326.510 | |
| SRR5643661 | five period of Gastrodia elata | 508.090 | |
| SRR5643662 | five period of Gastrodia elata | 697.730 | |
| SRR5643663 | five period of Gastrodia elata | 574.400 | |
| SRR5643664 | five period of Gastrodia elata | 656.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 176.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 193.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 163.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 139.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 86.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 86.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 137.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 114.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 309.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 164.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 224.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 224.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 312.20 |
| Juven | Juvenile tuber | 60.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,366.75 | |
| Mother_Juven | Mother tuber of Juvenile | 805.83 |