Detail information of GWHGAAEX007095/CADD00568.1.gene
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0017 | 3.00E-12 | FOG: Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations |
| nr | gi|147818456|emb|CAN71978.1| | 1.19E-16 | hypothetical protein VITISV_019883 [Vitis vinifera] |
| trEMBL | tr|A5B3B1|A5B3B1_VITVI | 4.00E-17 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN71978.1} |
| TAIR | AT3G31970 | 3.00E-12 | transposable element gene |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000196 | 267478 | 276944 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007095
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module12 | AUX/IAA_EAR_family AUX/IAA_EAR_family CYTOCHROME_P582_Family CYTOCHROME_P582_Family GO:0004725 protein tyrosine phosphatase activity GOslim:molecular_function GO:0008171 O-methyltransferase activity GOslim:molecular_function GO:0009733 response to auxin GOslim:biological_process GO:0010215 cellulose microfibril organization GOslim:biological_process GO:0015079 potassium ion transmembrane transporter activity GOslim:molecular_function GO:0031225 anchored component of membrane GOslim:cellular_component GO:0071805 potassium ion transmembrane transport GOslim:biological_process map02020 Two-component system map04075 Plant hormone signal transduction map04975 Fat digestion and absorption Protein Kinases RLK-Pelle_WAK Family Protein Kinases RLK-Pelle_WAK Family Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family Transcription factor C2H2 Family Transcription factor C2H2 Family Transcription factor SBP Family Transcription factor SBP Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.050 |
| SRR2545915 | Juvenile tuber | 0.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.890 |
| SRR5643514 | five period of Gastrodia elata | 4.720 | |
| SRR5643515 | five period of Gastrodia elata | 5.540 | |
| SRR5643524 | five period of Gastrodia elata | 6.810 | |
| SRR5643525 | five period of Gastrodia elata | 3.590 | |
| SRR5643528 | five period of Gastrodia elata | 36.160 | |
| SRR5643658 | five period of Gastrodia elata | 2.980 | |
| SRR5643659 | five period of Gastrodia elata | 1.690 | |
| SRR5643660 | five period of Gastrodia elata | 2.190 | |
| SRR5643661 | five period of Gastrodia elata | 1.550 | |
| SRR5643662 | five period of Gastrodia elata | 1.010 | |
| SRR5643663 | five period of Gastrodia elata | 1.270 | |
| SRR5643664 | five period of Gastrodia elata | 1.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.26 |
| Juven | Juvenile tuber | 4.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.43 | |
| Mother_Juven | Mother tuber of Juvenile | 28.91 |