Gene detail

Detail information of GWHGAAEX006916/evm.TU.scaffold_190.21

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2390	8.00E-170	Uncharacterized conserved protein
nr	gi\|672132484\|ref\|XP_008789826.1\|	0	PREDICTED: LOW QUALITY PROTEIN: rab3 GTPase-activating protein catalytic subunit-like [Phoenix dactylifera]
trEMBL	tr\|M0SUA6\|M0SUA6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P33440_001}
TAIR	AT5G55060	8.00E-170	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000186	1001827	1049825	+

Transcript Sequence
>GWHTAAEX006916 ATTTCACTATGTACAGATGTCTCTAAATTGTATTTTTTTAAACCTCAGTCTATTTATACAAGAGAATCATTTATCTCTAAATTTTACTTTACTCTCATTTCAGTTCAATTTAAACAGCCCAGAAAAAATAAAAGATCTGATGCCATATACAGATATTTTTAAAACTACCTTGGACCGTTCCTCGTCGTCTTCCGTCTTCGCTACTGACTTCAACATTTATACCAACATGCAGTGAGCGAGAAGATGCACATCATTCCGTTTGATGTACCCCGCGAACCCGATCGAATGGAGTCCTCTTCTTCCATCGCCGTGGAGGCCTCTGCGTCCGTCCGCAGCGTTTCTTTTCCCGCACTATCTTTTGTATCTAGGGCTAAGATCGCTCTGCACTCTGCCGCGGCCCGGGCTGAAAAGGCACTAACTGATATCAAGGCGGATTTGAAGACTGATCGTGATGGCGACGGACAGGCAAAGAGGGATTCCAAGATAATGGAGGGCCAGGTATTAACTGGATGTGATGGATTTAGCAACCCAAGCGAGGAGATTTCTGAAGCATGCTTTGCTACAAAACAAGATGTAAATAATTTCTCTAACAAACTAACAGTTCCTCCAACCTCTGTTCTAAAGAAGTTGGCAGCAGCTTATGAGGCTGGGAAGAATTTTATATGCTCAAAAAATATTTCATATTTAGTTGAGGGTCCATTACCAACAAGGGAAAAATCAGGCTTGAGCTTTACTGCTGTTAAATCCTTGGTTCTTCGTGAAAAGGGTGGCAAATCCTTTTCTGATTTTTCTGATGAAGAGCTTCATTCCTTAATGCAACAATTATTCAATTCAGAGAAATCATATTACCATGCTGATTCCGGATCATGTTTAACTTGCTCTCCGATGACATATATGCTCAAGATTAGAGGTGCACCTCCTGAGAGCTTTACAGTCAAGCTTTCTGAAGTTATTGGAAGCTTCGAATCCCTTAAAAAAATGACATCTTTTTGGTGTTGCGTTGTTATTGAACTTAGGAGACTATGGTCTGAAGGATTACCAGTTCCTCGGATGCCACTGGATGCAAGTCCTGAATTAAATTCTTGTTTACTGCACCAGCAATTGCAGGTGATCAATTGCTGTATTTATAGGAAGCTACGAAGAAATGCTGCTATTGAGTCATTGAATTCTGTGTTAAAGGAAGCCAGTTTAGACAACAAAGATTTGGTTGATTCTCCTGGGAAGTCTAATAGCTTGAAATATGCAAGACTCGCCTCAGGGGAGTATGTTCTTAGACTAGGCGCTGATCATCTTTCTGAAAGTTTATCAATGTTGGAAACTGGTGAACCCATATATTCTCCAGTTACACAGGAAGGTCCCATTCTAACAGATGAACTTATTAAGGAAACTGAAGAACTAATTCTCCGAACTGGCAGTTTTGGTGCTGGATGTTCTCAATTGCTCTCAGACATGCAAGCTTTCAAGGCTGCGAATCCTGGTTGTGTTTTAGAAGATTTTATAAGATGGCACTCTCCTCCAGACTGGACAATAACTGAAACTTGTAAGGCTACTGATTCCATTGATGGAGAAGGATCATCAAGGCGTGGCAGTCTAAGTAAAAGAATGCTGACAGAAGGCAACTTATGGCAAGAATTGTGGAGATCTGCCAAAGCAATGCCTGCTGTTCAACAAACACCAGTTTTTGACGAAGATTTAGCTGTTGAAAACATATTCAACACTTTGGAGGACATTCGACCTTCTGAGCTCTTCGAGCAGCTTTTTGTCTCAATGCTCTGCTCAGCCTTTGCAATTGCAGAAGCTGTCATTCCTCCAGGCAGCAACGCCTCAGAAATATTCTGTGATTGCAAAGAATGGGTTACTTCCACCTGCCAAAATGGCATTTCAACTGACAATATTGGCGATATTTGCAAGGTGTATGAGACGGTGGAGACGATCGTCACCCATCCTGAAGAAGCCATCTCTATCGTGGACCAAACTGAAGAAGAATCATCGCTTCATGAAGCGCCGAAGAATCGTTTCAAAAGAATTAACTTTAAATTCATCAAGAAAGAGACCAGTTTGTTAAGGAAAAAGCCTTCAAAGGATGAGAAGAAATCCGAGGAGAAACAATTGCATGCGTTTTCTCAACTCTTTGCTAAGAAGTCCTTATTTTCAAAGAAGCCACCAAAGCATGAGCGAGCATGAAAATCTGAGCCAATGCCCGACGAGGAGGTTAATGATTGGAGGACCATCGTGTAGATGTAAAAAATTAAAATAGCAACTCCACATGAAAGTAAAAAAAGATCATTTTCATTGTGTTATGAGCTTTTCCATTGTTCATGTAGATAATTGAAAGATGGAAAATGAAATGAAATGCTTTTTCATCGTCGCATGAGCTTCCATCCATTCCTGTAAGAAAAGGACACTGCTATAAAAATGCACCCACTGAATGAAAGAATGCTACCTGTATTCACATGAGGCTGTTATCCAACTTTTTTGTGTGTTATGTTAGCTACAGTATTGCTCATTTTCTGACAGAATATGAAAAATAGTCCAGGTGTCAAGACCAACAACGTAAGTTCAAACAAAATGTTTCATTGAAAAAGTT

Network for GWHGAAEX006916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13890.5	Rab3-GTPase_cat	343	494	4.20E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005096	Molecular Function	GTPase activator activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.410
SRP064423	SRR2545915	Juvenile tuber	8.540
SRP108465	SRR5643513	five period of Gastrodia elata	9.560
	SRR5643514	five period of Gastrodia elata	9.030
	SRR5643515	five period of Gastrodia elata	8.530
	SRR5643524	five period of Gastrodia elata	9.430
	SRR5643525	five period of Gastrodia elata	10.440
	SRR5643528	five period of Gastrodia elata	13.340
	SRR5643658	five period of Gastrodia elata	13.810
	SRR5643659	five period of Gastrodia elata	7.260
	SRR5643660	five period of Gastrodia elata	7.880
	SRR5643661	five period of Gastrodia elata	7.930
	SRR5643662	five period of Gastrodia elata	7.990
	SRR5643663	five period of Gastrodia elata	7.530
	SRR5643664	five period of Gastrodia elata	6.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.510
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.190
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.640
SRP279888	Gastro	Gastrodia elata tuber	8.05
	Juven	Juvenile tuber	10.30
	Mother_Gastro	Mother tuber of Gastrodia elata	11.30
	Mother_Juven	Mother tuber of Juvenile	9.36