Detail information of GWHGAAEX005978/evm.TU.scaffold_175.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743847506|ref|XP_010939120.1|6.91E-144PREDICTED: elongator complex protein 5 [Elaeis guineensis]
Swissprottr|F4IQJ2|ELP5_ARATH7.00E-94Elongator complex protein 5
trEMBLtr|A0A097PMP7|A0A097PMP7_9ASPA7.00E-134AT2G18410-like protein {ECO:0000313|EMBL:AIU49302.1} (Fragment)
TAIRAT2G184102.00E-77Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000017511792701198508+
Transcript Sequence

Network for GWHGAAEX005978

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10483.8Elong_Iki11473053.60E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0002098Biological ProcesstRNA wobble uridine modification
GO:0033588Cellular ComponentElongator holoenzyme complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.850
SRR2545915Juvenile tuber17.720
SRP108465SRR5643513five period of Gastrodia elata12.940
SRR5643514five period of Gastrodia elata12.090
SRR5643515five period of Gastrodia elata14.290
SRR5643524five period of Gastrodia elata13.640
SRR5643525five period of Gastrodia elata18.650
SRR5643528five period of Gastrodia elata28.700
SRR5643658five period of Gastrodia elata17.300
SRR5643659five period of Gastrodia elata11.460
SRR5643660five period of Gastrodia elata11.730
SRR5643661five period of Gastrodia elata11.270
SRR5643662five period of Gastrodia elata12.730
SRR5643663five period of Gastrodia elata11.610
SRR5643664five period of Gastrodia elata8.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.930
SRR6049655Rhizomagastrodiae_C368-T10_good_111.950
SRR6049656Rhizomagastrodiae_C368-T07_good_114.190
SRR6049657Rhizomagastrodiae_C368-T07_good_112.190
SRR6049658Rhizomagastrodiae_C368-T04_good_111.350
SRR6049659Rhizomagastrodiae_C368-T04_good_111.700
SRR6049660Rhizomagastrodiae_C368-T01_good_111.590
SRR6049661Rhizomagastrodiae_C368-T04_good_111.140
SRR6049662Rhizomagastrodiae_C368-T01_good_111.940
SRR6049663Rhizomagastrodiae_C368-T01_good_114.000
SRR6049664Rhizomagastrodiae_C368-T10_good_117.280
SRR6049665Rhizomagastrodiae_C368-T10_good_117.280
SRP279888GastroGastrodia elata tuber 12.61
JuvenJuvenile tuber9.31
Mother_GastroMother tuber of Gastrodia elata 30.77
Mother_JuvenMother tuber of Juvenile 22.19