Detail information of GWHGAAEX005486/evm.TU.scaffold_164.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310820368|ref|YP_003952726.1| | 8.00E-35 | cellulase [Stigmatella aurantiaca DW4/3-1] |
| nr | gi|743864293|ref|XP_010904543.1| | 0 | PREDICTED: uncharacterized protein LOC105031942 [Elaeis guineensis] |
| trEMBL | tr|B9RMT6|B9RMT6_RICCO | 0 | Hydrolase, hydrolyzing O-glycosyl compounds, putative {ECO:0000313|EMBL:EEF47609.1} |
| TAIR | AT1G13130 | 0 | Cellulase (glycosyl hydrolase family 5) protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000168 | 1468155 | 1471222 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005486
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 | GO:0003677 DNA binding GOslim:molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function GO:0004857 enzyme inhibitor activity GOslim:molecular_function GO:0005975 carbohydrate metabolic process GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006629 lipid metabolic process GOslim:biological_process GO:0008081 phosphoric diester hydrolase activity GOslim:molecular_function GO:0008234 cysteine-type peptidase activity GOslim:molecular_function GO:0009055 electron carrier activity GOslim:molecular_function GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function GO:0015035 protein disulfide oxidoreductase activity GOslim:molecular_function GO:0015267 channel activity GOslim:molecular_function GO:0016020 membrane GOslim:cellular_component GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function GO:0046556 alpha-L-arabinofuranosidase activity GOslim:molecular_function GO:0046983 protein dimerization activity GOslim:molecular_function Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family Transcription factor C2C2-Dof Family Transcription factor C2C2-Dof Family Transcription factor NAC Family Transcription factor NAC Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00150.17 | Cellulase | 67 | 349 | 1.10E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH5 |
| Carbohydrate-Active enzymes Family | GH5 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.150 |
| SRR5643514 | five period of Gastrodia elata | 0.300 | |
| SRR5643515 | five period of Gastrodia elata | 0.450 | |
| SRR5643524 | five period of Gastrodia elata | 0.340 | |
| SRR5643525 | five period of Gastrodia elata | 17.530 | |
| SRR5643528 | five period of Gastrodia elata | 21.260 | |
| SRR5643658 | five period of Gastrodia elata | 37.320 | |
| SRR5643659 | five period of Gastrodia elata | 0.210 | |
| SRR5643660 | five period of Gastrodia elata | 0.030 | |
| SRR5643661 | five period of Gastrodia elata | 0.070 | |
| SRR5643662 | five period of Gastrodia elata | 0.030 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.37 | |
| Mother_Juven | Mother tuber of Juvenile | 4.34 |