Detail information of GWHGAAEX003765/evm.TU.scaffold_14.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-25 | FOG: PPR repeat |
| nr | gi|695049900|ref|XP_009412904.1| | 3.22E-31 | PREDICTED: pentatricopeptide repeat-containing protein At3g16610-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O23337|PP311_ARATH | 2.00E-25 | Pentatricopeptide repeat-containing protein At4g14820 |
| trEMBL | tr|M0Y909|M0Y909_HORVD | 6.00E-32 | Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_6687.10, ECO:0000313|EnsemblPlants:MLOC_6687.8} |
| TAIR | AT4G14820 | 8.00E-25 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 1753343 | 1753843 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003765
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 | GO:0003677 DNA binding GOslim:molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function GO:0004857 enzyme inhibitor activity GOslim:molecular_function GO:0005975 carbohydrate metabolic process GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006629 lipid metabolic process GOslim:biological_process GO:0008081 phosphoric diester hydrolase activity GOslim:molecular_function GO:0008234 cysteine-type peptidase activity GOslim:molecular_function GO:0009055 electron carrier activity GOslim:molecular_function GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function GO:0015035 protein disulfide oxidoreductase activity GOslim:molecular_function GO:0015267 channel activity GOslim:molecular_function GO:0016020 membrane GOslim:cellular_component GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function GO:0046556 alpha-L-arabinofuranosidase activity GOslim:molecular_function GO:0046983 protein dimerization activity GOslim:molecular_function Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family Transcription factor C2C2-Dof Family Transcription factor C2C2-Dof Family Transcription factor NAC Family Transcription factor NAC Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 14 | 36 | 0.065 |
| PF01535.19 | PPR | 48 | 72 | 0.018 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 41.030 | |
| SRR5643658 | five period of Gastrodia elata | 16.460 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 25.050 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.09 |
| Juven | Juvenile tuber | 15.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.60 | |
| Mother_Juven | Mother tuber of Juvenile | 16.18 |