Detail information of GWHGAAEX003203/evm.TU.scaffold_130.61


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|78485639|ref|YP_391564.1|1.00E-29MscS mechanosensitive ion channel [Thiomicrospira crunogena XCL-2]
nrgi|672127463|ref|XP_008787195.1|0PREDICTED: mechanosensitive ion channel protein 2, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprottr|Q56X46|MSL2_ARATH0Mechanosensitive ion channel protein 2, chloroplastic (Precursor)
trEMBLtr|M0TW29|M0TW29_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P34270_001}
TAIRAT1G582000MSCS-like 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012913229941369938+
Transcript Sequence

Network for GWHGAAEX003203

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00924.17MS_channel2414441.30E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.960
SRR2545915Juvenile tuber13.700
SRP108465SRR5643513five period of Gastrodia elata15.570
SRR5643514five period of Gastrodia elata17.190
SRR5643515five period of Gastrodia elata16.290
SRR5643524five period of Gastrodia elata16.040
SRR5643525five period of Gastrodia elata28.240
SRR5643528five period of Gastrodia elata29.360
SRR5643658five period of Gastrodia elata26.180
SRR5643659five period of Gastrodia elata13.000
SRR5643660five period of Gastrodia elata12.390
SRR5643661five period of Gastrodia elata12.180
SRR5643662five period of Gastrodia elata15.570
SRR5643663five period of Gastrodia elata15.070
SRR5643664five period of Gastrodia elata17.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.510
SRR6049655Rhizomagastrodiae_C368-T10_good_113.680
SRR6049656Rhizomagastrodiae_C368-T07_good_115.460
SRR6049657Rhizomagastrodiae_C368-T07_good_117.180
SRR6049658Rhizomagastrodiae_C368-T04_good_117.010
SRR6049659Rhizomagastrodiae_C368-T04_good_117.240
SRR6049660Rhizomagastrodiae_C368-T01_good_117.020
SRR6049661Rhizomagastrodiae_C368-T04_good_119.010
SRR6049662Rhizomagastrodiae_C368-T01_good_114.690
SRR6049663Rhizomagastrodiae_C368-T01_good_117.890
SRR6049664Rhizomagastrodiae_C368-T10_good_115.220
SRR6049665Rhizomagastrodiae_C368-T10_good_115.220
SRP279888GastroGastrodia elata tuber 15.18
JuvenJuvenile tuber12.69
Mother_GastroMother tuber of Gastrodia elata 31.14
Mother_JuvenMother tuber of Juvenile 15.37