Detail information of GWHGAAEX017181/evm.TU.scaffold_8.281


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743842521|ref|XP_010937829.1|2.63E-17PREDICTED: DNA-binding protein S1FA-like [Elaeis guineensis]
Swissprottr|Q7XLX6|S1FA2_ORYSJ6.00E-17DNA-binding protein S1FA2
trEMBLtr|A2XT48|A2XT48_ORYSI1.00E-15Putative uncharacterized protein {ECO:0000313|EMBL:EAY94008.1}
TAIRAT2G371205.00E-10S1FA-like DNA-binding protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000041071233610739966-
Transcript Sequence

Network for GWHGAAEX017181

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7GO:0005506 iron ion binding GOslim:molecular_function
GO:0005576 extracellular region GOslim:cellular_component
GO:0010333 terpene synthase activity GOslim:molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function
GO:0016829 lyase activity GOslim:molecular_function
GO:0020037 heme binding GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process
map00906 Carotenoid biosynthesis
map00908 Zeatin biosynthesis
map01110 Biosynthesis of secondary metabolites
map02010 ABC transporters
map04976 Bile secretion
Transcription factor AP2/ERF-AP2 Family Transcription factor AP2/ERF-AP2 Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04689.12S1FA1011641.30E-37
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyS1Fa-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms55.750
SRR2545915Juvenile tuber72.690
SRP108465SRR5643513five period of Gastrodia elata54.730
SRR5643514five period of Gastrodia elata53.940
SRR5643515five period of Gastrodia elata60.390
SRR5643524five period of Gastrodia elata65.910
SRR5643525five period of Gastrodia elata45.420
SRR5643528five period of Gastrodia elata88.350
SRR5643658five period of Gastrodia elata67.910
SRR5643659five period of Gastrodia elata43.590
SRR5643660five period of Gastrodia elata41.390
SRR5643661five period of Gastrodia elata44.040
SRR5643662five period of Gastrodia elata52.690
SRR5643663five period of Gastrodia elata45.870
SRR5643664five period of Gastrodia elata36.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.210
SRR6049655Rhizomagastrodiae_C368-T10_good_112.990
SRR6049656Rhizomagastrodiae_C368-T07_good_152.410
SRR6049657Rhizomagastrodiae_C368-T07_good_134.640
SRR6049658Rhizomagastrodiae_C368-T04_good_134.100
SRR6049659Rhizomagastrodiae_C368-T04_good_127.090
SRR6049660Rhizomagastrodiae_C368-T01_good_138.560
SRR6049661Rhizomagastrodiae_C368-T04_good_133.970
SRR6049662Rhizomagastrodiae_C368-T01_good_158.160
SRR6049663Rhizomagastrodiae_C368-T01_good_147.650
SRR6049664Rhizomagastrodiae_C368-T10_good_187.820
SRR6049665Rhizomagastrodiae_C368-T10_good_187.820
SRP279888GastroGastrodia elata tuber 19.37
JuvenJuvenile tuber9.11
Mother_GastroMother tuber of Gastrodia elata 18.67
Mother_JuvenMother tuber of Juvenile 15.03