Gene detail

Detail information of GWHGAAEX014015/evm.TU.scaffold_55.42

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0799	Branching enzyme
nr	gi\|672187708\|ref\|XP_008813401.1\|	PREDICTED: xylosyltransferase 1-like [Phoenix dactylifera]
trEMBL	tr\|M7Z3C2\|M7Z3C2_TRIUA	Xylosyltransferase 2 {ECO:0000313\|EMBL:EMS46875.1}
TAIR	AT1G03520	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000056	1383241	1387931	+

Transcript Sequence
>GWHTAAEX014015 TAGCCCTTTTGAATTTGCCATCGAAATTTGGAGTTTAGTCTAAGCGGCTAGCTAAGCTGGGGGATTTTACCGTTTCTCACTGGGATGAAGCTTTCCTATCTCCTACTCTGCTGACCGGAAAGGCGTAGTCTCCCTTCGTCTTCATTCATCTTCTGCTCAGCTTTCACGCTTCTATCAGTTTTGTCATTATGACTTCCATTCCTCTCTACTCGATAATTTCCCATTTTCTGTCCGTCCTGTGCTTCTTAGAGCATTTCTCTATACGAGCTTAGGCTTCGCTACCGTCTATCAACTGCTTGGAACTTTCCTTCTGAGAAACCCTTTAGATCTGAAGTTTCAGTTGCAGATATTGATTTCCTGCTGAACTTTCACTTTTCCAAGCAGGGAGAATGTAGGTAGAGATCCACCGTGATGGCACGTCACTGGCTCCATAGATATCTTCGTGGCATCTCACCTCCCGTAGAGATCCACGGTGAAGGCACGTCACTGATTCCGCCAGACGCAGACGCCCTTCTCTTCTCTTCGAACCAGAACTCAGCATTTTGGAGCAGAACTCAGCATTTTGATTGTGCCACCCCTGATTTTTTTTGTACGAGGAATCTCCTGGGAATTGCATTATATTTTGGTCACTTCTCTGCAGAGTTCTAGGGATTGGATCGTTGTGGTGATAGTATTAGTTACAGTTTTGAACGTTGGAAAATATGAGGAAGACTGGAAGTACGCACACAGGAAGGCCTTTTAGTGACAGAAGTTGGTTTCTTCCTTTTTTAGCAAGTTTGGTGGTCTCTGTTACTTTATTTTTTGCTGCTGTATTTGGGATTTTCTCCACTCGTTATAGTGAAGATTCACACCCTTCAGATGATATATTGTTCACTAGGGTGGATGATTTTGATGGTCATTCGATTGATTTTGGGAATAACAAGGAATCCAATATGCCTTCTCCTATTGAAATTGAACCTCCACGGATTGCTTATCTTGTTACCGGAACGAAAGGCGACAACCAGAGAATGAGGAGGACGCTACAGGCGATATATCATCCAAGAAATCAGTATATTCTTCATCTAGATCTTGAGGCCCCGCCGCGGGAAAGGATAGAGTTGGCCATGTATGTAAAGAATGATCCAGTGTTTAGTGCTGTTGAAAATGTTCGTGTTATTGCAAAAGGCAACTTAGTGACTTACAGGGGTCCGACAATGATTGCCTGTACTCTTCATGCCATTGCAATCTTATTGAAGGAGAACTTGAAGTGGGATTGGTTCATAAATCTTAGCGCTTCGGATTATCCCTTAATGACACAAGATGATCTATGCAATGCATTTTCTTCTATTCCGAGAGGACTCAATTTTATTGAACACACTCAGAGCACAGGCTGGAAAAATAACCAACGGGCAAAGCCAATCATTGTTGATCCAGGGTTATATTTGTCAAAGAAGTTTGATGTTGTTATCACCAATGACCGGCGAGAGCTCCCGACATCTTTCAAATTGTTCACAGGATCTGCATGGGTAATGCTTTCCCGGTCCTTCCTAGAGTATTGCATCTGGGGTTGGGAAAGCCTTCCCCGAACCATCTTGATGTATTATGTAAACTTCATCTCCTCCCCTGAAGGTTATTTCCATACAGTGATATGCAATTCCGACGAGTTCCGAAACACAACCATTAGCCATGACCTTCATTACATCGCATGGGACACCCCTCCAAAGCAGCATCCGCGCACCCTCTCCATGATGGACTTTAAAGAAATGGTTAAGAGTGGCGCCCCCTTTGCTCGAAAATTCCCAAAGGACGATCCAGTTCTTGACAAAATTGATCGGGAGCTTCTCAGACGATCCGAGGGTCAATTCACTCCTGGTGCTTGGTGCATTGGAAAATCGGATGGTGGAGAGGATCCTTGCTTATTTAGAGGAAATGATTCATTTTTTCAGTCTGGAGCAGGTTCTGAGAGGTTAAGGGAGTTGATAAATAAGATAACTTTGAAAGAATTTAGAAGTGCGAGCTGCTCTTCATTGAGATATGATCAGACTAAGAGGGAATGGGTTGGCTCTTGAGGTGGTTGGAAGTTGCTTTAGTTACATGAATATGACACGTTAAAAGGCATTTTCTTGATAATCTTGCAATTAGAAGGTTTCTTTTTCTCCTGGTTGGGCGCTTTTTGTTTTCTTCTCATTTTTTTGTATTGTTCAACATCTAAAAAACCATATATATATATATATAT

Network for GWHGAAEX014015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02485.20	Branch	89	348	1.80E-71

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT14
Carbohydrate-Active enzymes Family	GT14

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008375	Molecular Function	acetylglucosaminyltransferase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.640
SRP064423	SRR2545915	Juvenile tuber	28.440
SRP108465	SRR5643513	five period of Gastrodia elata	36.930
	SRR5643514	five period of Gastrodia elata	35.540
	SRR5643515	five period of Gastrodia elata	39.680
	SRR5643524	five period of Gastrodia elata	37.380
	SRR5643525	five period of Gastrodia elata	40.690
	SRR5643528	five period of Gastrodia elata	42.760
	SRR5643658	five period of Gastrodia elata	38.210
	SRR5643659	five period of Gastrodia elata	35.200
	SRR5643660	five period of Gastrodia elata	35.890
	SRR5643661	five period of Gastrodia elata	32.030
	SRR5643662	five period of Gastrodia elata	37.580
	SRR5643663	five period of Gastrodia elata	38.240
	SRR5643664	five period of Gastrodia elata	28.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.760
SRP279888	Gastro	Gastrodia elata tuber	31.01
	Juven	Juvenile tuber	26.33
	Mother_Gastro	Mother tuber of Gastrodia elata	66.92
	Mother_Juven	Mother tuber of Juvenile	44.37