Detail information of GWHGAAEX011611/evm.TU.scaffold_38.194


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|339504956|ref|YP_004692376.1|1.00E-2730S ribosomal protein S16 [Roseobacter litoralis Och 149]
KOGKOG34196.00E-50Mitochondrial/chloroplast ribosomal protein S16
nrgi|225444887|ref|XP_002281553.1|1.90E-50PREDICTED: 37S ribosomal protein S16, mitochondrial [Vitis vinifera]
Swissprottr|Q9MUR5|RR16_MESVI2.00E-1830S ribosomal protein S16, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00385}
trEMBLtr|D7TB62|D7TB62_VITVI7.00E-51Putative uncharacterized protein {ECO:0000313|EMBL:CBI27897.3}
TAIRAT5G569406.00E-50Ribosomal protein S16 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004156170825618835-
Transcript Sequence

Network for GWHGAAEX011611

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00886.18Ribosomal_S169701.10E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02959RP-S16, MRPS16, rpsP Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.450
SRR2545915Juvenile tuber26.540
SRP108465SRR5643513five period of Gastrodia elata18.430
SRR5643514five period of Gastrodia elata18.630
SRR5643515five period of Gastrodia elata11.800
SRR5643524five period of Gastrodia elata14.070
SRR5643525five period of Gastrodia elata11.080
SRR5643528five period of Gastrodia elata6.570
SRR5643658five period of Gastrodia elata9.260
SRR5643659five period of Gastrodia elata30.880
SRR5643660five period of Gastrodia elata33.290
SRR5643661five period of Gastrodia elata27.380
SRR5643662five period of Gastrodia elata18.640
SRR5643663five period of Gastrodia elata18.900
SRR5643664five period of Gastrodia elata25.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.320
SRR6049655Rhizomagastrodiae_C368-T10_good_120.320
SRR6049656Rhizomagastrodiae_C368-T07_good_125.610
SRR6049657Rhizomagastrodiae_C368-T07_good_118.890
SRR6049658Rhizomagastrodiae_C368-T04_good_125.440
SRR6049659Rhizomagastrodiae_C368-T04_good_122.240
SRR6049660Rhizomagastrodiae_C368-T01_good_127.480
SRR6049661Rhizomagastrodiae_C368-T04_good_127.410
SRR6049662Rhizomagastrodiae_C368-T01_good_140.480
SRR6049663Rhizomagastrodiae_C368-T01_good_133.930
SRR6049664Rhizomagastrodiae_C368-T10_good_130.610
SRR6049665Rhizomagastrodiae_C368-T10_good_130.610
SRP279888GastroGastrodia elata tuber 61.78
JuvenJuvenile tuber16.34
Mother_GastroMother tuber of Gastrodia elata 18.87
Mother_JuvenMother tuber of Juvenile 9.63