Gene detail

Detail information of GWHGAAEX011330/evm.TU.scaffold_37.73

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1721	1.00E-25	FOG: Zn-finger
nr	gi\|695061269\|ref\|XP_009419061.1\|	5.76E-38	PREDICTED: zinc finger protein AZF3-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q42430\|ZFP1_WHEAT	4.00E-27	Zinc finger protein 1
trEMBL	tr\|K0A0J9\|K0A0J9_ELAGV	2.00E-35	Zinc-finger protein {ECO:0000313\|EMBL:AFS65093.1} (Fragment)
TAIR	AT3G49930	1.00E-25	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000043	1904357	1905401	+

Transcript Sequence
>GWHTAAEX011330 CCCCTCACTCACAGATTCTGCAGTATTCCAACTCAGAAAAAGGAGAAAAACAAAGAGGCGAATAATCGGAATCCCTGCTCTGCGTCCATGGCAGAAGGCGCTCCTGCAGAATCAACGTCAATCGAGTCGCCTGCAATCTCCGGCGATTCTCGGATCCGCCCCTTCGATCGGCCGATGAAGCGAAAACGATCGAAGCGTCCGATCCAATCGATGGATTCCCCTTCCTCCGACGAAGAACACATTGCCATCTGCCTGCTCATGCTCTCAGGATCCGATCCCAGCGCCAAGCTCGGCCATCCGTGCTCCCTCTGCGGCAAATCCTTCCCGTCCTACCACGCCCTCGGAGGCCACATGACCAGCCACAGGAAACCCCTCTCTCCTGTCTCTCCCCACGACTGCGTCTCCGCCGAATCCTCAAAGATTCACCAGTGCTTGATCTGCTTCAGGATCTTCCCCTCCGGCCAGGCCCTCGGAGGCCACAAGCGCCGCCACTTCGACGGAACCCTCGGAAGCGCCGCCGGCGCAGGATCGGCTTCCGACGATTTGATCCATGGCGCTGTCGGAAGTGGATCAGGGCTGGATCTGAATCTGCCGCCGGTAAACGATTTCGCCGGATCTTTGGGACGCCGCTGCCTTGATGAGGACGACGATACGCGGAGTTCTCCGTCCCTGAAGAAGCCATATTTCGTTCTCTCCGTTTAGTGTTTCCGATTCTTTGATTTGATTTCATCGATTTTTTGTGTTCTTAGGTTTTTTGACTTGGTTCGATTTGATTTTGCTTCCGGCTATCGATTTCGCAGGAGCTTTGGGCGATTCGTCCTCACCGTTTTGGTTGTTTGATTCTTTGATTTGATTTCCTTTTTTGTTTGTTGTATTAGTAGGTATTTTAAGTTAGGGTCGATCTGATTCTGCCGTCAGAGCTTTGGGTGGTGATGCTTGCTGCGAAGAAGAAACCCTGTTTCGATCTCAACGTTTTGGTGCTCTGATTCTTTGATTTTATTTTCGTTTGATACAAAATTTTATAATTAATTGTGTGTTTTTCATT

Network for GWHGAAEX011330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module12	AUX/IAA_EAR_family AUX/IAA_EAR_family CYTOCHROME_P582_Family CYTOCHROME_P582_Family GO:0004725 protein tyrosine phosphatase activity GOslim:molecular_function GO:0008171 O-methyltransferase activity GOslim:molecular_function GO:0009733 response to auxin GOslim:biological_process GO:0010215 cellulose microfibril organization GOslim:biological_process GO:0015079 potassium ion transmembrane transporter activity GOslim:molecular_function GO:0031225 anchored component of membrane GOslim:cellular_component GO:0071805 potassium ion transmembrane transport GOslim:biological_process map02020 Two-component system map04075 Plant hormone signal transduction map04975 Fat digestion and absorption Protein Kinases RLK-Pelle_WAK Family Protein Kinases RLK-Pelle_WAK Family Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family Transcription factor C2H2 Family Transcription factor C2H2 Family Transcription factor SBP Family Transcription factor SBP Family

Module ID

Function Annotation

Module12

AUX/IAA_EAR_family AUX/IAA_EAR_family
CYTOCHROME_P582_Family CYTOCHROME_P582_Family
GO:0004725 protein tyrosine phosphatase activity GOslim:molecular_function
GO:0008171 O-methyltransferase activity GOslim:molecular_function
GO:0009733 response to auxin GOslim:biological_process
GO:0010215 cellulose microfibril organization GOslim:biological_process
GO:0015079 potassium ion transmembrane transporter activity GOslim:molecular_function
GO:0031225 anchored component of membrane GOslim:cellular_component
GO:0071805 potassium ion transmembrane transport GOslim:biological_process
map02020 Two-component system
map04075 Plant hormone signal transduction
map04975 Fat digestion and absorption
Protein Kinases RLK-Pelle_WAK Family Protein Kinases RLK-Pelle_WAK Family
Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family
Transcription factor C2H2 Family Transcription factor C2H2 Family
Transcription factor SBP Family Transcription factor SBP Family

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.5	zf-C2H2_6	70	94	3.90E-11
PF13912.5	zf-C2H2_6	113	135	2.90E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.450
SRP064423	SRR2545915	Juvenile tuber	42.050
SRP108465	SRR5643513	five period of Gastrodia elata	44.690
	SRR5643514	five period of Gastrodia elata	41.510
	SRR5643515	five period of Gastrodia elata	84.860
	SRR5643524	five period of Gastrodia elata	55.410
	SRR5643525	five period of Gastrodia elata	12.590
	SRR5643528	five period of Gastrodia elata	64.370
	SRR5643658	five period of Gastrodia elata	11.990
	SRR5643659	five period of Gastrodia elata	36.450
	SRR5643660	five period of Gastrodia elata	20.540
	SRR5643661	five period of Gastrodia elata	24.120
	SRR5643662	five period of Gastrodia elata	35.250
	SRR5643663	five period of Gastrodia elata	17.980
	SRR5643664	five period of Gastrodia elata	33.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	94.640
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.550
SRP279888	Gastro	Gastrodia elata tuber	40.03
	Juven	Juvenile tuber	56.38
	Mother_Gastro	Mother tuber of Gastrodia elata	433.37
	Mother_Juven	Mother tuber of Juvenile	297.96