Detail information of GWHGAAEX011143/evm.TU.scaffold_35.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000034 | 5870769 | 5871278 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX011143
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module11 | CYTOCHROME_P498_Family CYTOCHROME_P498_Family CYTOCHROME_P526_Family CYTOCHROME_P526_Family GO:0000387 spliceosomal snRNP assembly GOslim:biological_process GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function GO:0005681 spliceosomal complex GOslim:cellular_component GO:0006464 cellular protein modification process GOslim:biological_process GO:0006662 glycerol ether metabolic process GOslim:biological_process GO:0015995 chlorophyll biosynthetic process GOslim:biological_process GO:0034968 histone lysine methylation GOslim:biological_process GO:0039694 viral RNA genome replication GOslim:biological_process GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function map00780 Biotin metabolism map03010 Ribosome Transcription factor GRF Family Transcription factor GRF Family Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0039694 | Biological Process | viral RNA genome replication |
| GO:0003968 | Molecular Function | RNA-directed RNA polymerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 1.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.220 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.230 | |
| SRR5643524 | five period of Gastrodia elata | 0.790 | |
| SRR5643525 | five period of Gastrodia elata | 0.270 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 1.120 | |
| SRR5643659 | five period of Gastrodia elata | 5.690 | |
| SRR5643660 | five period of Gastrodia elata | 6.500 | |
| SRR5643661 | five period of Gastrodia elata | 2.840 | |
| SRR5643662 | five period of Gastrodia elata | 3.750 | |
| SRR5643663 | five period of Gastrodia elata | 5.290 | |
| SRR5643664 | five period of Gastrodia elata | 8.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.35 |
| Juven | Juvenile tuber | 5.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.55 | |
| Mother_Juven | Mother tuber of Juvenile | 7.03 |