Detail information of GWHGAAEX011126/evm.TU.scaffold_35.87


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268316364|ref|YP_003290083.1|1.00E-15Fis family two component sigma-54 specific transcriptional regulator [Rhodothermus marinus DSM 4252]
KOGKOG16013.00E-79GATA-4/5/6 transcription factors
nrgi|743767715|ref|XP_010914127.1|3.10E-99PREDICTED: putative two-component response regulator ARR20 [Elaeis guineensis]
Swissprottr|O49397|ARR10_ARATH8.00E-80Two-component response regulator ARR10
trEMBLtr|M0RKU0|M0RKU0_MUSAM1.00E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P23650_001}
TAIRAT4G319203.00E-79response regulator 10

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000003448710494876500+
Transcript Sequence

Network for GWHGAAEX011126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00072.23Response_reg201278.30E-21
PF00249.30Myb_DNA-binding1972452.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-ARR-B

KEGG pathway

KO Enzyme pathway mapID
K14491ARR-B Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0007165Biological Processsignal transduction
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.820
SRR2545915Juvenile tuber4.550
SRP108465SRR5643513five period of Gastrodia elata3.820
SRR5643514five period of Gastrodia elata4.280
SRR5643515five period of Gastrodia elata3.440
SRR5643524five period of Gastrodia elata4.260
SRR5643525five period of Gastrodia elata9.860
SRR5643528five period of Gastrodia elata3.590
SRR5643658five period of Gastrodia elata11.380
SRR5643659five period of Gastrodia elata4.020
SRR5643660five period of Gastrodia elata3.750
SRR5643661five period of Gastrodia elata3.940
SRR5643662five period of Gastrodia elata3.670
SRR5643663five period of Gastrodia elata4.000
SRR5643664five period of Gastrodia elata4.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.820
SRR6049655Rhizomagastrodiae_C368-T10_good_16.100
SRR6049656Rhizomagastrodiae_C368-T07_good_16.060
SRR6049657Rhizomagastrodiae_C368-T07_good_19.050
SRR6049658Rhizomagastrodiae_C368-T04_good_18.350
SRR6049659Rhizomagastrodiae_C368-T04_good_19.510
SRR6049660Rhizomagastrodiae_C368-T01_good_16.070
SRR6049661Rhizomagastrodiae_C368-T04_good_16.730
SRR6049662Rhizomagastrodiae_C368-T01_good_12.960
SRR6049663Rhizomagastrodiae_C368-T01_good_14.120
SRR6049664Rhizomagastrodiae_C368-T10_good_13.530
SRR6049665Rhizomagastrodiae_C368-T10_good_13.530
SRP279888GastroGastrodia elata tuber 7.94
JuvenJuvenile tuber5.98
Mother_GastroMother tuber of Gastrodia elata 3.78
Mother_JuvenMother tuber of Juvenile 6.80