Detail information of GWHGAAEX010774/evm.TU.scaffold_32.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220933028|ref|YP_002509936.1| | 0 | cation-transporting ATPase A [Halothermothrix orenii H 168] |
| KOG | KOG0202 | 0 | Ca2+ transporting ATPase |
| nr | gi|743836580|ref|XP_010936144.1| | 0 | PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Elaeis guineensis] |
| Swissprot | tr|Q9SY55|ECA3_ARATH | 0 | Calcium-transporting ATPase 3, endoplasmic reticulum-type |
| trEMBL | tr|K4A5B3|K4A5B3_SETIT | 0 | Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146} |
| TAIR | AT1G10130 | 0 | endoplasmic reticulum-type calcium-transporting ATPase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000032 | 1736714 | 1844167 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010774
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00690.25 | Cation_ATPase_N | 6 | 72 | 2.20E-18 |
| PF00122.19 | E1-E2_ATPase | 122 | 324 | 3.10E-49 |
| PF13246.5 | Cation_ATPase | 415 | 524 | 3.20E-22 |
| PF00702.25 | Hydrolase | 582 | 705 | 9.30E-16 |
| PF00689.20 | Cation_ATPase_C | 775 | 974 | 1.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006816 | Biological Process | calcium ion transport |
| GO:0005388 | Molecular Function | calcium-transporting ATPase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.880 |
| SRR2545915 | Juvenile tuber | 17.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.180 |
| SRR5643514 | five period of Gastrodia elata | 15.570 | |
| SRR5643515 | five period of Gastrodia elata | 14.410 | |
| SRR5643524 | five period of Gastrodia elata | 17.190 | |
| SRR5643525 | five period of Gastrodia elata | 19.730 | |
| SRR5643528 | five period of Gastrodia elata | 17.670 | |
| SRR5643658 | five period of Gastrodia elata | 19.910 | |
| SRR5643659 | five period of Gastrodia elata | 14.780 | |
| SRR5643660 | five period of Gastrodia elata | 15.890 | |
| SRR5643661 | five period of Gastrodia elata | 14.510 | |
| SRR5643662 | five period of Gastrodia elata | 11.800 | |
| SRR5643663 | five period of Gastrodia elata | 14.520 | |
| SRR5643664 | five period of Gastrodia elata | 12.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.49 |
| Juven | Juvenile tuber | 17.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.92 | |
| Mother_Juven | Mother tuber of Juvenile | 15.97 |