Detail information of GWHGAAEX010177/evm.TU.scaffold_275.19_evm.TU.scaffold_275.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG14731.00E-111Nucleosome remodeling factor, subunit NURF301/BPTF
nrgi|565393295|ref|XP_006362316.1|0PREDICTED: uncharacterized protein LOC102579382 [Solanum tuberosum]
Swissprottr|F4KBP5|CHR4_ARATH6.00E-10Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|A0A096S3Y8|A0A096S3Y8_MAIZE0Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G128176_P03}
trEMBLtr|A0A096S3Y8|A0A096S3Y8_MAIZE3.00E-11Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G128176_P03}
TAIRAT5G227601.00E-111PHD finger family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000270368468388334+
Transcript Sequence

Network for GWHGAAEX010177

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02791.16DDT2683171.40E-11
PF15612.5WHIM13714000.00071
PF00628.28PHD4605026.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyDDT

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.120
SRR2545915Juvenile tuber31.320
SRP108465SRR5643513five period of Gastrodia elata20.100
SRR5643514five period of Gastrodia elata19.910
SRR5643515five period of Gastrodia elata18.520
SRR5643524five period of Gastrodia elata18.290
SRR5643525five period of Gastrodia elata15.710
SRR5643528five period of Gastrodia elata15.540
SRR5643658five period of Gastrodia elata17.850
SRR5643659five period of Gastrodia elata15.270
SRR5643660five period of Gastrodia elata17.230
SRR5643661five period of Gastrodia elata15.640
SRR5643662five period of Gastrodia elata14.450
SRR5643663five period of Gastrodia elata15.510
SRR5643664five period of Gastrodia elata16.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.280
SRR6049655Rhizomagastrodiae_C368-T10_good_121.760
SRR6049656Rhizomagastrodiae_C368-T07_good_123.730
SRR6049657Rhizomagastrodiae_C368-T07_good_139.340
SRR6049658Rhizomagastrodiae_C368-T04_good_133.370
SRR6049659Rhizomagastrodiae_C368-T04_good_141.290
SRR6049660Rhizomagastrodiae_C368-T01_good_135.670
SRR6049661Rhizomagastrodiae_C368-T04_good_131.830
SRR6049662Rhizomagastrodiae_C368-T01_good_122.880
SRR6049663Rhizomagastrodiae_C368-T01_good_123.840
SRR6049664Rhizomagastrodiae_C368-T10_good_120.040
SRR6049665Rhizomagastrodiae_C368-T10_good_120.040
SRP279888GastroGastrodia elata tuber 17.01
JuvenJuvenile tuber34.12
Mother_GastroMother tuber of Gastrodia elata 20.59
Mother_JuvenMother tuber of Juvenile 31.07