Detail information of GWHGAAEX010128/evm.TU.scaffold_27.102
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 5482403 | 5482789 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010128
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module11 | CYTOCHROME_P498_Family CYTOCHROME_P498_Family CYTOCHROME_P526_Family CYTOCHROME_P526_Family GO:0000387 spliceosomal snRNP assembly GOslim:biological_process GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function GO:0005681 spliceosomal complex GOslim:cellular_component GO:0006464 cellular protein modification process GOslim:biological_process GO:0006662 glycerol ether metabolic process GOslim:biological_process GO:0015995 chlorophyll biosynthetic process GOslim:biological_process GO:0034968 histone lysine methylation GOslim:biological_process GO:0039694 viral RNA genome replication GOslim:biological_process GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function map00780 Biotin metabolism map03010 Ribosome Transcription factor GRF Family Transcription factor GRF Family Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.010 |
| SRR2545915 | Juvenile tuber | 1.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.430 |
| SRR5643514 | five period of Gastrodia elata | 0.330 | |
| SRR5643515 | five period of Gastrodia elata | 1.970 | |
| SRR5643524 | five period of Gastrodia elata | 0.670 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 3.070 | |
| SRR5643658 | five period of Gastrodia elata | 0.660 | |
| SRR5643659 | five period of Gastrodia elata | 1.010 | |
| SRR5643660 | five period of Gastrodia elata | 1.890 | |
| SRR5643661 | five period of Gastrodia elata | 1.140 | |
| SRR5643662 | five period of Gastrodia elata | 2.350 | |
| SRR5643663 | five period of Gastrodia elata | 0.290 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.04 |
| Juven | Juvenile tuber | 0.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.36 | |
| Mother_Juven | Mother tuber of Juvenile | 1.73 |