Detail information of GWHGAAEX010073/evm.TU.scaffold_27.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|720085030|ref|XP_010243394.1| | 4.02E-18 | PREDICTED: zinc finger protein 8-like [Nelumbo nucifera] |
| Swissprot | tr|Q84WI0|GIS_ARATH | 2.00E-15 | Zinc finger protein GIS |
| trEMBL | tr|M0TSS7|M0TSS7_MUSAM | 1.00E-18 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P22740_001} |
| TAIR | AT3G58070 | 7.00E-15 | C2H2 and C2HC zinc fingers superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000023 | 606610 | 607550 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX010073
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 | CYTOCHROME_P507_Family CYTOCHROME_P507_Family CYTOCHROME_P517_Family CYTOCHROME_P517_Family CYTOCHROME_P530_Family CYTOCHROME_P530_Family CYTOCHROME_P545_Family CYTOCHROME_P545_Family CYTOCHROME_P553_Family CYTOCHROME_P553_Family Glycoside Hydrolases 16 Glycoside Hydrolases 16 GlycosylTransferases 35 GlycosylTransferases 35 GO:0005618 cell wall GOslim:cellular_component GO:0005975 carbohydrate metabolic process GOslim:biological_process GO:0006021 inositol biosynthetic process GOslim:biological_process GO:0006073 cellular glucan metabolic process GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006457 protein folding GOslim:biological_process GO:0006629 lipid metabolic process GOslim:biological_process GO:0007166 cell surface receptor signaling pathway GOslim:biological_process GO:0008202 steroid metabolic process GOslim:biological_process GO:0008299 isoprenoid biosynthetic process GOslim:biological_process GO:0010411 xyloglucan metabolic process GOslim:biological_process GO:0015846 polyamine transport GOslim:biological_process GO:0030001 metal ion transport GOslim:biological_process GO:0042026 protein refolding GOslim:biological_process GO:0042546 cell wall biogenesis GOslim:biological_process GO:0042597 periplasmic space GOslim:cellular_component GO:0048046 apoplast GOslim:cellular_component HB-HD-ZIP_EAR_family HB-HD-ZIP_EAR_family Protein Kinases RLK-Pelle_LRR-Xb-1 Family Protein Kinases RLK-Pelle_LRR-Xb-1 Family Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family Transcription factor bHLH Family Transcription factor bHLH Family Transcription factor C2C2-GATA Family Transcription factor C2C2-GATA Family Transcription factor HB-HD-ZIP Family Transcription factor HB-HD-ZIP Family Transcription factor HSF Family Transcription factor HSF Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.300 |
| SRR2545915 | Juvenile tuber | 54.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.900 |
| SRR5643514 | five period of Gastrodia elata | 3.360 | |
| SRR5643515 | five period of Gastrodia elata | 20.420 | |
| SRR5643524 | five period of Gastrodia elata | 6.430 | |
| SRR5643525 | five period of Gastrodia elata | 0.480 | |
| SRR5643528 | five period of Gastrodia elata | 0.200 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 42.480 | |
| SRR5643660 | five period of Gastrodia elata | 89.630 | |
| SRR5643661 | five period of Gastrodia elata | 95.050 | |
| SRR5643662 | five period of Gastrodia elata | 80.110 | |
| SRR5643663 | five period of Gastrodia elata | 61.320 | |
| SRR5643664 | five period of Gastrodia elata | 16.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.76 |
| Juven | Juvenile tuber | 16.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.54 | |
| Mother_Juven | Mother tuber of Juvenile | 5.96 |