Detail information of GWHGAAEX009718/evm.TU.scaffold_255.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG31722.00E-69Small nuclear ribonucleoprotein Sm D3
nrgi|255539216|ref|XP_002510673.1|1.07E-84small nuclear ribonucleoprotein, putative [Ricinus communis]
Swissprottr|Q43582|LSM4_TOBAC6.00E-14Probable U6 snRNA-associated Sm-like protein LSm4
trEMBLtr|B9R8N0|B9R8N0_RICCO4.00E-85Small nuclear ribonucleoprotein, putative {ECO:0000313|EMBL:EEF52860.1}
TAIRAT1G205802.00E-69Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000258399999410341+
Transcript Sequence

Network for GWHGAAEX009718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM11743.00E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11088SNRPD3, SMD3 Spliceosome map03040
Mitophagy - yeastmap04139

Gene Ontology

GO term OntologyName
GO:0000387Biological Processspliceosomal snRNP assembly
GO:0005681Cellular Componentspliceosomal complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms172.740
SRR2545915Juvenile tuber168.480
SRP108465SRR5643513five period of Gastrodia elata180.550
SRR5643514five period of Gastrodia elata213.900
SRR5643515five period of Gastrodia elata192.360
SRR5643524five period of Gastrodia elata205.290
SRR5643525five period of Gastrodia elata180.640
SRR5643528five period of Gastrodia elata135.660
SRR5643658five period of Gastrodia elata119.100
SRR5643659five period of Gastrodia elata245.260
SRR5643660five period of Gastrodia elata279.110
SRR5643661five period of Gastrodia elata274.910
SRR5643662five period of Gastrodia elata255.940
SRR5643663five period of Gastrodia elata235.480
SRR5643664five period of Gastrodia elata283.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1238.990
SRR6049655Rhizomagastrodiae_C368-T10_good_156.220
SRR6049656Rhizomagastrodiae_C368-T07_good_1267.300
SRR6049657Rhizomagastrodiae_C368-T07_good_1231.980
SRR6049658Rhizomagastrodiae_C368-T04_good_1288.080
SRR6049659Rhizomagastrodiae_C368-T04_good_1258.020
SRR6049660Rhizomagastrodiae_C368-T01_good_1268.060
SRR6049661Rhizomagastrodiae_C368-T04_good_1273.470
SRR6049662Rhizomagastrodiae_C368-T01_good_1320.400
SRR6049663Rhizomagastrodiae_C368-T01_good_1339.610
SRR6049664Rhizomagastrodiae_C368-T10_good_1246.930
SRR6049665Rhizomagastrodiae_C368-T10_good_1246.930
SRP279888GastroGastrodia elata tuber 709.39
JuvenJuvenile tuber382.23
Mother_GastroMother tuber of Gastrodia elata 272.40
Mother_JuvenMother tuber of Juvenile 220.53