Detail information of GWHGAAEX009355/evm.TU.scaffold_245.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG33442.00E-7440s ribosomal protein s10
nrgi|413918327|gb|AFW58259.1|4.79E-95hypothetical protein ZEAMMB73_772347 [Zea mays]
Swissprottr|Q9AYP4|RS10_ORYSJ3.00E-8640S ribosomal protein S10
trEMBLtr|K7UII3|K7UII3_MAIZE2.00E-95Uncharacterized protein {ECO:0000313|EMBL:AFW58259.1, ECO:0000313|EnsemblPlants:GRMZM2G043737_P05}
TAIRAT4G257402.00E-74RNA binding Plectin/S10 domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000248305390306919+
Transcript Sequence

Network for GWHGAAEX009355

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03501.14S10_plectin3942.90E-43
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02947RP-S10e, RPS10 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms42.920
SRR2545915Juvenile tuber82.160
SRP108465SRR5643513five period of Gastrodia elata91.080
SRR5643514five period of Gastrodia elata85.670
SRR5643515five period of Gastrodia elata79.340
SRR5643524five period of Gastrodia elata82.890
SRR5643525five period of Gastrodia elata46.300
SRR5643528five period of Gastrodia elata69.790
SRR5643658five period of Gastrodia elata42.740
SRR5643659five period of Gastrodia elata107.930
SRR5643660five period of Gastrodia elata105.360
SRR5643661five period of Gastrodia elata121.630
SRR5643662five period of Gastrodia elata127.970
SRR5643663five period of Gastrodia elata104.870
SRR5643664five period of Gastrodia elata114.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1122.930
SRR6049655Rhizomagastrodiae_C368-T10_good_174.870
SRR6049656Rhizomagastrodiae_C368-T07_good_1145.270
SRR6049657Rhizomagastrodiae_C368-T07_good_1100.400
SRR6049658Rhizomagastrodiae_C368-T04_good_1140.450
SRR6049659Rhizomagastrodiae_C368-T04_good_1129.440
SRR6049660Rhizomagastrodiae_C368-T01_good_1143.870
SRR6049661Rhizomagastrodiae_C368-T04_good_1145.800
SRR6049662Rhizomagastrodiae_C368-T01_good_1195.970
SRR6049663Rhizomagastrodiae_C368-T01_good_1183.100
SRR6049664Rhizomagastrodiae_C368-T10_good_1151.160
SRR6049665Rhizomagastrodiae_C368-T10_good_1151.160
SRP279888GastroGastrodia elata tuber 345.46
JuvenJuvenile tuber89.04
Mother_GastroMother tuber of Gastrodia elata 115.89
Mother_JuvenMother tuber of Juvenile 93.09