Detail information of GWHGAAEX009119/evm.TU.scaffold_235.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|188577994|ref|YP_001914923.1|2.00E-08nuclear protein SET [Xanthomonas oryzae pv. oryzae PXO99A]
KOGKOG10827.00E-133Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
nrgi|743836250|ref|XP_010936035.1|0PREDICTED: histone-lysine N-methyltransferase SUVR2 [Elaeis guineensis]
Swissprottr|Q8W595|SUVR4_ARATH2.00E-149Histone-lysine N-methyltransferase SUVR4
trEMBLtr|M0S1J2|M0S1J2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20340_001}
TAIRAT3G043807.00E-133SET-domain containing protein lysine methyltransferase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000245800078849541+
Transcript Sequence

Network for GWHGAAEX009119

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05033.15Pre-SET1382842.50E-16
PF00856.27SET3044312.60E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0034968Biological Processhistone lysine methylation
GO:0008270Molecular Functionzinc ion binding
GO:0005515Molecular Functionprotein binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.350
SRR2545915Juvenile tuber6.070
SRP108465SRR5643513five period of Gastrodia elata2.160
SRR5643514five period of Gastrodia elata2.350
SRR5643515five period of Gastrodia elata2.270
SRR5643524five period of Gastrodia elata1.870
SRR5643525five period of Gastrodia elata2.270
SRR5643528five period of Gastrodia elata1.310
SRR5643658five period of Gastrodia elata2.200
SRR5643659five period of Gastrodia elata7.460
SRR5643660five period of Gastrodia elata6.870
SRR5643661five period of Gastrodia elata6.640
SRR5643662five period of Gastrodia elata7.040
SRR5643663five period of Gastrodia elata10.140
SRR5643664five period of Gastrodia elata6.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.340
SRR6049655Rhizomagastrodiae_C368-T10_good_12.610
SRR6049656Rhizomagastrodiae_C368-T07_good_11.830
SRR6049657Rhizomagastrodiae_C368-T07_good_12.460
SRR6049658Rhizomagastrodiae_C368-T04_good_14.150
SRR6049659Rhizomagastrodiae_C368-T04_good_13.240
SRR6049660Rhizomagastrodiae_C368-T01_good_12.700
SRR6049661Rhizomagastrodiae_C368-T04_good_12.370
SRR6049662Rhizomagastrodiae_C368-T01_good_11.980
SRR6049663Rhizomagastrodiae_C368-T01_good_12.050
SRR6049664Rhizomagastrodiae_C368-T10_good_12.140
SRR6049665Rhizomagastrodiae_C368-T10_good_12.140
SRP279888GastroGastrodia elata tuber 12.37
JuvenJuvenile tuber5.45
Mother_GastroMother tuber of Gastrodia elata 7.97
Mother_JuvenMother tuber of Juvenile 4.83