Detail information of GWHGAAEX009003/evm.TU.scaffold_230.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|566034906|gb|AHC30880.1|0COBRA-like protein [Oncidium hybrid cultivar]
Swissprottr|Q6Z4G8|COBL1_ORYSJ0COBRA-like protein 1 (Precursor)
trEMBLtr|V9QM13|V9QM13_ONCHC0COBRA-like protein {ECO:0000313|EMBL:AHC30880.1}
TAIRAT3G022100COBRA-like protein 1 precursor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000227170862180355-
Transcript Sequence

Network for GWHGAAEX009003

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module12AUX/IAA_EAR_family AUX/IAA_EAR_family
CYTOCHROME_P582_Family CYTOCHROME_P582_Family
GO:0004725 protein tyrosine phosphatase activity GOslim:molecular_function
GO:0008171 O-methyltransferase activity GOslim:molecular_function
GO:0009733 response to auxin GOslim:biological_process
GO:0010215 cellulose microfibril organization GOslim:biological_process
GO:0015079 potassium ion transmembrane transporter activity GOslim:molecular_function
GO:0031225 anchored component of membrane GOslim:cellular_component
GO:0071805 potassium ion transmembrane transport GOslim:biological_process
map02020 Two-component system
map04075 Plant hormone signal transduction
map04975 Fat digestion and absorption
Protein Kinases RLK-Pelle_WAK Family Protein Kinases RLK-Pelle_WAK Family
Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family
Transcription factor C2H2 Family Transcription factor C2H2 Family
Transcription factor SBP Family Transcription factor SBP Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04833.14COBRA1282914.80E-73
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0010215Biological Processcellulose microfibril organization
GO:0031225Cellular Componentanchored component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.050
SRR2545915Juvenile tuber8.890
SRP108465SRR5643513five period of Gastrodia elata7.350
SRR5643514five period of Gastrodia elata8.120
SRR5643515five period of Gastrodia elata9.560
SRR5643524five period of Gastrodia elata8.370
SRR5643525five period of Gastrodia elata9.750
SRR5643528five period of Gastrodia elata8.310
SRR5643658five period of Gastrodia elata6.170
SRR5643659five period of Gastrodia elata10.840
SRR5643660five period of Gastrodia elata8.670
SRR5643661five period of Gastrodia elata11.130
SRR5643662five period of Gastrodia elata11.700
SRR5643663five period of Gastrodia elata12.770
SRR5643664five period of Gastrodia elata10.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.270
SRR6049655Rhizomagastrodiae_C368-T10_good_111.570
SRR6049656Rhizomagastrodiae_C368-T07_good_15.370
SRR6049657Rhizomagastrodiae_C368-T07_good_16.160
SRR6049658Rhizomagastrodiae_C368-T04_good_15.680
SRR6049659Rhizomagastrodiae_C368-T04_good_14.650
SRR6049660Rhizomagastrodiae_C368-T01_good_15.400
SRR6049661Rhizomagastrodiae_C368-T04_good_17.420
SRR6049662Rhizomagastrodiae_C368-T01_good_110.360
SRR6049663Rhizomagastrodiae_C368-T01_good_17.400
SRR6049664Rhizomagastrodiae_C368-T10_good_18.150
SRR6049665Rhizomagastrodiae_C368-T10_good_18.150
SRP279888GastroGastrodia elata tuber 7.80
JuvenJuvenile tuber6.16
Mother_GastroMother tuber of Gastrodia elata 12.25
Mother_JuvenMother tuber of Juvenile 3.28