Detail information of GWHGAAEX008869/evm.TU.scaffold_23.180


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|197284318|ref|YP_002150190.1|2.00E-20cold shock protein CspE [Proteus mirabilis HI4320]
KOGKOG30703.00E-35Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing
nrgi|593129220|ref|XP_007131692.1|1.37E-46hypothetical protein PHAVU_011G033900g [Phaseolus vulgaris]
Swissprottr|O65639|CSP1_ARATH1.00E-35Cold shock protein 1
trEMBLtr|V7AHY2|V7AHY2_PHAVU5.00E-47Uncharacterized protein {ECO:0000313|EMBL:ESW03686.1}
TAIRAT4G360203.00E-35cold shock domain protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002546169044617542+
Transcript Sequence

Network for GWHGAAEX008869

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3CYTOCHROME_P507_Family CYTOCHROME_P507_Family
CYTOCHROME_P517_Family CYTOCHROME_P517_Family
CYTOCHROME_P530_Family CYTOCHROME_P530_Family
CYTOCHROME_P545_Family CYTOCHROME_P545_Family
CYTOCHROME_P553_Family CYTOCHROME_P553_Family
Glycoside Hydrolases 16 Glycoside Hydrolases 16
GlycosylTransferases 35 GlycosylTransferases 35
GO:0005618 cell wall GOslim:cellular_component
GO:0005975 carbohydrate metabolic process GOslim:biological_process
GO:0006021 inositol biosynthetic process GOslim:biological_process
GO:0006073 cellular glucan metabolic process GOslim:biological_process
GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process
GO:0006457 protein folding GOslim:biological_process
GO:0006629 lipid metabolic process GOslim:biological_process
GO:0007166 cell surface receptor signaling pathway GOslim:biological_process
GO:0008202 steroid metabolic process GOslim:biological_process
GO:0008299 isoprenoid biosynthetic process GOslim:biological_process
GO:0010411 xyloglucan metabolic process GOslim:biological_process
GO:0015846 polyamine transport GOslim:biological_process
GO:0030001 metal ion transport GOslim:biological_process
GO:0042026 protein refolding GOslim:biological_process
GO:0042546 cell wall biogenesis GOslim:biological_process
GO:0042597 periplasmic space GOslim:cellular_component
GO:0048046 apoplast GOslim:cellular_component
HB-HD-ZIP_EAR_family HB-HD-ZIP_EAR_family
Protein Kinases RLK-Pelle_LRR-Xb-1 Family Protein Kinases RLK-Pelle_LRR-Xb-1 Family
Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family
Transcription factor bHLH Family Transcription factor bHLH Family
Transcription factor C2C2-GATA Family Transcription factor C2C2-GATA Family
Transcription factor HB-HD-ZIP Family Transcription factor HB-HD-ZIP Family
Transcription factor HSF Family Transcription factor HSF Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00313.21CSD8732.00E-27
PF00098.22zf-CCHC1371513.70E-07
PF00098.22zf-CCHC1932091.30E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyCSD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms226.160
SRR2545915Juvenile tuber246.820
SRP108465SRR5643513five period of Gastrodia elata510.050
SRR5643514five period of Gastrodia elata417.720
SRR5643515five period of Gastrodia elata463.600
SRR5643524five period of Gastrodia elata509.770
SRR5643525five period of Gastrodia elata141.280
SRR5643528five period of Gastrodia elata292.580
SRR5643658five period of Gastrodia elata126.040
SRR5643659five period of Gastrodia elata789.010
SRR5643660five period of Gastrodia elata869.130
SRR5643661five period of Gastrodia elata1005.610
SRR5643662five period of Gastrodia elata833.900
SRR5643663five period of Gastrodia elata670.000
SRR5643664five period of Gastrodia elata843.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1352.080
SRR6049655Rhizomagastrodiae_C368-T10_good_1228.370
SRR6049656Rhizomagastrodiae_C368-T07_good_1405.280
SRR6049657Rhizomagastrodiae_C368-T07_good_1321.750
SRR6049658Rhizomagastrodiae_C368-T04_good_1470.380
SRR6049659Rhizomagastrodiae_C368-T04_good_1464.710
SRR6049660Rhizomagastrodiae_C368-T01_good_1449.120
SRR6049661Rhizomagastrodiae_C368-T04_good_1427.570
SRR6049662Rhizomagastrodiae_C368-T01_good_1387.580
SRR6049663Rhizomagastrodiae_C368-T01_good_1514.630
SRR6049664Rhizomagastrodiae_C368-T10_good_1273.560
SRR6049665Rhizomagastrodiae_C368-T10_good_1273.560
SRP279888GastroGastrodia elata tuber 608.69
JuvenJuvenile tuber228.69
Mother_GastroMother tuber of Gastrodia elata 180.66
Mother_JuvenMother tuber of Juvenile 173.71