Detail information of GWHGAAEX008665/evm.TU.scaffold_227.40


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|206901413|ref|YP_002250709.1|2.00E-07ribosomal protein L29 [Dictyoglomus thermophilum H-6-12]
KOGKOG34362.00E-6860S ribosomal protein L35
nrgi|728820943|gb|KHG04036.1|4.99E-7260S ribosomal L35 [Gossypium arboreum]
Swissprottr|Q9M5L0|RL35_EUPES4.00E-7360S ribosomal protein L35
trEMBLtr|M5X1K6|M5X1K6_PRUPE2.00E-72Uncharacterized protein {ECO:0000313|EMBL:EMJ19804.1}
TAIRAT5G026102.00E-68Ribosomal L29 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000241591702595569+
Transcript Sequence

Network for GWHGAAEX008665

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00831.22Ribosomal_L298646.50E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02918RP-L35e, RPL35 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms855.910
SRR2545915Juvenile tuber928.180
SRP108465SRR5643513five period of Gastrodia elata1381.830
SRR5643514five period of Gastrodia elata1461.550
SRR5643515five period of Gastrodia elata1210.360
SRR5643524five period of Gastrodia elata1238.450
SRR5643525five period of Gastrodia elata1251.450
SRR5643528five period of Gastrodia elata925.570
SRR5643658five period of Gastrodia elata877.370
SRR5643659five period of Gastrodia elata1617.940
SRR5643660five period of Gastrodia elata1876.570
SRR5643661five period of Gastrodia elata1822.160
SRR5643662five period of Gastrodia elata1902.880
SRR5643663five period of Gastrodia elata1700.080
SRR5643664five period of Gastrodia elata2071.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11791.630
SRR6049655Rhizomagastrodiae_C368-T10_good_12725.740
SRR6049656Rhizomagastrodiae_C368-T07_good_11915.080
SRR6049657Rhizomagastrodiae_C368-T07_good_11662.870
SRR6049658Rhizomagastrodiae_C368-T04_good_11871.360
SRR6049659Rhizomagastrodiae_C368-T04_good_11812.960
SRR6049660Rhizomagastrodiae_C368-T01_good_11671.370
SRR6049661Rhizomagastrodiae_C368-T04_good_11744.090
SRR6049662Rhizomagastrodiae_C368-T01_good_12140.610
SRR6049663Rhizomagastrodiae_C368-T01_good_12235.990
SRR6049664Rhizomagastrodiae_C368-T10_good_12285.770
SRR6049665Rhizomagastrodiae_C368-T10_good_12285.770
SRP279888GastroGastrodia elata tuber 4,988.03
JuvenJuvenile tuber3,833.43
Mother_GastroMother tuber of Gastrodia elata 1,939.16
Mother_JuvenMother tuber of Juvenile 1,903.03