Detail information of GWHGAAEX008519/evm.TU.scaffold_220.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG38017.00E-26Uncharacterized conserved protein BCN92
nrgi|695022304|ref|XP_009398276.1|2.85E-38PREDICTED: LYR motif-containing protein 4-like [Musa acuminata subsp. malaccensis]
trEMBLtr|F6GT31|F6GT31_VITVI7.00E-38Putative uncharacterized protein {ECO:0000313|EMBL:CCB43055.1}
TAIRAT5G612207.00E-26LYR family of Fe/S cluster biogenesis protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000215205421205711-
Transcript Sequence

Network for GWHGAAEX008519

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05347.14Complex1_LYR17711.60E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms117.130
SRR2545915Juvenile tuber140.030
SRP108465SRR5643513five period of Gastrodia elata170.850
SRR5643514five period of Gastrodia elata233.470
SRR5643515five period of Gastrodia elata154.110
SRR5643524five period of Gastrodia elata193.690
SRR5643525five period of Gastrodia elata464.400
SRR5643528five period of Gastrodia elata258.950
SRR5643658five period of Gastrodia elata265.270
SRR5643659five period of Gastrodia elata229.360
SRR5643660five period of Gastrodia elata305.340
SRR5643661five period of Gastrodia elata279.510
SRR5643662five period of Gastrodia elata357.210
SRR5643663five period of Gastrodia elata290.750
SRR5643664five period of Gastrodia elata382.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1169.710
SRR6049655Rhizomagastrodiae_C368-T10_good_1577.470
SRR6049656Rhizomagastrodiae_C368-T07_good_1204.360
SRR6049657Rhizomagastrodiae_C368-T07_good_1179.540
SRR6049658Rhizomagastrodiae_C368-T04_good_1184.440
SRR6049659Rhizomagastrodiae_C368-T04_good_1144.470
SRR6049660Rhizomagastrodiae_C368-T01_good_1171.040
SRR6049661Rhizomagastrodiae_C368-T04_good_1156.520
SRR6049662Rhizomagastrodiae_C368-T01_good_1209.030
SRR6049663Rhizomagastrodiae_C368-T01_good_1162.860
SRR6049664Rhizomagastrodiae_C368-T10_good_1229.690
SRR6049665Rhizomagastrodiae_C368-T10_good_1229.690
SRP279888GastroGastrodia elata tuber 637.31
JuvenJuvenile tuber358.83
Mother_GastroMother tuber of Gastrodia elata 210.95
Mother_JuvenMother tuber of Juvenile 243.20