Gene detail

Detail information of GWHGAAEX008396/evm.TU.scaffold_217.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158334857\|ref\|YP_001516029.1\|	3.00E-58	sphingosine kinase 2 [Acaryochloris marina MBIC11017]
KOG	KOG1116	2.00E-151	Sphingosine kinase, involved in sphingolipid metabolism
nr	gi\|743868454\|ref\|XP_010905575.1\|	0	PREDICTED: sphingosine kinase 2-like [Elaeis guineensis]
Swissprot	tr\|F2Y4A3\|SPHK2_ARATH	8.00E-171	Sphingosine kinase 2
trEMBL	tr\|M0SRJ1\|M0SRJ1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P23800_001}
TAIR	AT4G21540	2.00E-151	sphingosine kinase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000221	889884	915837	+

Transcript Sequence
>GWHTAAEX008396 ATTTTGATTGATGAAAGCCTAATGTTTTTGCCTCATGTTTTTGTCTAAGCTCAACTGATGTTGAGTGATTGTTTGGTTGGTTCCTAGGGAGGAGTTTGATGATTGTGGTTTTTGGTTTATAGATGTTTATGTTGTTGCCTTATTGAATGCTTTAGTTTGATTTGTTAATATTATATTTATGGCTATGAGTTTTTTATTTCTTTTAATTCATCTTCCATATTTTTATAGTGAAGGTTTTTCTTAGTTTGGTTTATGATCTCCAATTTGTCTATTTGGTATAAATGGCTTGGCTAAGTTGGGAGCTTGATAGAAGTTCTCTATCATTTTTTAATTCTTTGATTGTTTTTTTCTAATATAAGTTTGGTGAAGATTTTAGCTCCGCTGGTTACGTGCCACTGTCGACGTGTTTTCATACATTCGATATTCTAGCATTATTTTAGTTGAGGTTTTATTGGAATTCAAATGCTCGTACTTGAGATTTTTCTTAGTTAATTCTAATTGTTTATTTATTTTGCCAATCTTCTCTCTTAGAATTGATATTTGATTGGATTAGACTTAGCTCTAGATATTTAGAAAAATATTGTGATGCCTTTATTAATTTTTAAATTCTTAAAAATATTAAGAAATAATTATTAAAAATCTTGGACAAAAATGTATGGTCTAAATATAAATTAATAATATTTAAGAGCTGGTGTGATGGATAAATCATTCGAGCACTGCTTGGCTGTGCTCCTCTCGATCATATTTGGCTGACATTTGGAGTGGCGCCGGCGATGACTGATATGATTCAGCTTGACGGAGTACCGGCAAAGATGTCCCTGAGTGCCGGCGGTGAGTTGCAGTGGCGCCTTGACGGCGGCGGAGAGCAGAGCCTCGCAATAGACTCACAGGTTCTGGGCTTCTCGTCCGAGGGAAAGATGCTTACAGTTAGGGCCTACGTTTGTGAGCCCAGGGGCGGAGATGGTGAGCTGGGAAAGAGGGTAAGGAAGGACATTGTTCTCGAGATGCCCTCGACGATTATCGCCGAGGGATGGAGCCAGCAGATTAGAGATTACATCGATTCCTTAGGCCGTCCAAAGAGGGTATTTGTTATTTTAAACCCTTTCGGTGGAAAAGGATCAGCCCGAAGGATTTTTGATACTGAGATCAAACCTCTATTTGATGCGGCTAACATAATGTATACCTTGCAAGAAACTAAGTATCAGCTTCATGCTCAAGAACTTGCCTATAAATTTGATCTGCTAAAGTATGATGGCATTGTATGTGTGAGCGGAGATGGTGTTTTTGTTGAGGTAGTAAATGGATTGCTTCAAAGAGAAGATTGGGATTCTGCAATTCGGGTTCCCCTTGGGATCATTCCTGCAGGTACGGGTAATGGACTGGCTAAGTCACTTTTGGATGCAGTAGGAGAAATGTATTCAATACAGCATGCCACTTTCGCTGTTATAAGAGGCCATAAACGCTCACTGGACGTTACCACTGTATTGCAAGGAGAAACCAAATTTTTTAGCATCCTAATGCTTACTTGGGGGCTAATTGCTGATATTGACATTGAGTCTGAAAAATACAGGTGGATGGGTAGCACCCGCCTAGGCTTTTATTGTTTCCTGAGAGTAATGAAGTTGCGCAAATACCACGGTTATGTTGAGTTTGTTCCTGCTCCTGGACATGAACTCTATGGAGAACCATTGGAGGATAGCGGAACGTCAGTGAGCGCCATTAATAATATTTCTGAGCTAGAACAAGGCAAAGTTGCAAAAGTCTTGCAAAGTACTTACCAGGGGGCGCGTGTTTGTTTTGAAAAATCAGATTGGAGGTTTCTTGAAGGTCCCTTTGTGTCAATTTCTCTTGTAAATGTACCATGGGTTATGGAAGATGCTATGCCAGCACCTGAAGCAAAGTTTTCTGATGGCTTCTTGGACTTGGTACTGATCAAGGACTGCCCTAAGTCTGCTCTTTTGTCAATATTGCTGAAGATGAAAGATGGAAACCATGTTAAATCACCCTATGTCATGTATCTCAAGGTGAAGGCTTTTAGGCTGGTTCCAGGAAACCGTGTGGGTGACCCCACAAAGGGAGGCATTGTAGATGTTGATGGTGAAGTTGTTTCCAAGGGAGAAGGAATTCACTTGTGTGGCCAAGAAGGAGATTTGATGGCGTACGGCTCTCCTATCCGATTAACGGTCGATCAGGGCTTAGCCACCATTTACTCTCCAAGATGATGAGCCTAAACCCTAAAAGCTGAATCCTCAACCATTTACTCCAACAAGATGATGAGCCTAAATCCTCAAACTTCAACACTGTATGTAATTCTCCTTCTTTAACAAAAATGCTTATTAATCTTGTACACCATATGCGCAAACTGGGGGGGTATTAGTTTTGTGAAGTGAAAAGAATCCTCTAATTACATAGCTCCATTGTTTTTTCTTTCCAATCTGTATCATTGTTTAAGTAATGATGTACTCTCTCTTGAGAGCTTTCGGCTTTACCACCTAATGTCAAAGATCAACATGGTCTATTTAATGTGAACTTCAACTACTGTTATGAATAGGGTATGTTTCTCTCATTATTTTTTGAATTTTTCTGATGGTCAAGTTTAATGACTTTAAAAGAAAAATTGTTCATCTTCTTAAAATGTTTGTTGTTGTTCCAATTTAAACAAGGTTGTTGATAACTTGTATTGAATAAATGTCTTGATTGTTG

Network for GWHGAAEX008396

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00781.23	DAGK_cat	103	237	1.10E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04718	SPHK	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		VEGF signaling pathway	map04370
		Apelin signaling pathway	map04371
		Calcium signaling pathway	map04020
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0003951	Molecular Function	NAD+ kinase activity
GO:0016301	Molecular Function	kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.770
SRP064423	SRR2545915	Juvenile tuber	30.420
SRP108465	SRR5643513	five period of Gastrodia elata	23.480
	SRR5643514	five period of Gastrodia elata	34.690
	SRR5643515	five period of Gastrodia elata	24.590
	SRR5643524	five period of Gastrodia elata	30.750
	SRR5643525	five period of Gastrodia elata	35.210
	SRR5643528	five period of Gastrodia elata	33.540
	SRR5643658	five period of Gastrodia elata	47.830
	SRR5643659	five period of Gastrodia elata	14.270
	SRR5643660	five period of Gastrodia elata	13.500
	SRR5643661	five period of Gastrodia elata	13.330
	SRR5643662	five period of Gastrodia elata	14.160
	SRR5643663	five period of Gastrodia elata	17.040
	SRR5643664	five period of Gastrodia elata	18.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.160
SRP279888	Gastro	Gastrodia elata tuber	23.40
	Juven	Juvenile tuber	36.56
	Mother_Gastro	Mother tuber of Gastrodia elata	20.20
	Mother_Juven	Mother tuber of Juvenile	32.75