Detail information of GWHGAAEX008376/evm.TU.scaffold_216.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|332291610|ref|YP_004430219.1|1.00E-14small GTP-binding protein [Krokinobacter sp. 4H-3-7-5]
KOGKOG03931.00E-124Ras-related small GTPase, Rho type
nrgi|695037460|ref|XP_009406224.1|5.41E-135PREDICTED: rac-like GTP-binding protein ARAC7 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q68Y52|RAC2_ORYSJ4.00E-130Rac-like GTP-binding protein 2
trEMBLtr|M0TAH0|M0TAH0_MUSAM2.00E-135Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P26750_001}
TAIRAT4G289501.00E-124RHO-related protein from plants 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000211875107893156+
Transcript Sequence

Network for GWHGAAEX008376

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras81781.70E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04392RAC1 Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathwaymap04010
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
VEGF signaling pathwaymap04370
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
PI3K-Akt signaling pathwaymap04151
Phagosomemap04145
Focal adhesionmap04510
Adherens junctionmap04520
Tight junctionmap04530
Regulation of actin cytoskeletonmap04810
Toll-like receptor signaling pathwaymap04620
Natural killer cell mediated cytotoxicitymap04650
B cell receptor signaling pathwaymap04662
Fc epsilon RI signaling pathwaymap04664
Fc gamma R-mediated phagocytosismap04666
Leukocyte transendothelial migrationmap04670
Chemokine signaling pathwaymap04062
Pancreatic secretionmap04972
Neurotrophin signaling pathwaymap04722
Axon guidancemap04360
Axon regenerationmap04361
Osteoclast differentiationmap04380

Gene Ontology

GO term OntologyName
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.570
SRR2545915Juvenile tuber16.280
SRP108465SRR5643513five period of Gastrodia elata10.760
SRR5643514five period of Gastrodia elata14.120
SRR5643515five period of Gastrodia elata10.430
SRR5643524five period of Gastrodia elata13.010
SRR5643525five period of Gastrodia elata24.250
SRR5643528five period of Gastrodia elata22.180
SRR5643658five period of Gastrodia elata31.390
SRR5643659five period of Gastrodia elata16.850
SRR5643660five period of Gastrodia elata14.530
SRR5643661five period of Gastrodia elata12.670
SRR5643662five period of Gastrodia elata8.310
SRR5643663five period of Gastrodia elata12.140
SRR5643664five period of Gastrodia elata8.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_18.080
SRR6049655Rhizomagastrodiae_C368-T10_good_111.520
SRR6049656Rhizomagastrodiae_C368-T07_good_19.680
SRR6049657Rhizomagastrodiae_C368-T07_good_17.020
SRR6049658Rhizomagastrodiae_C368-T04_good_15.970
SRR6049659Rhizomagastrodiae_C368-T04_good_15.110
SRR6049660Rhizomagastrodiae_C368-T01_good_17.600
SRR6049661Rhizomagastrodiae_C368-T04_good_18.710
SRR6049662Rhizomagastrodiae_C368-T01_good_113.840
SRR6049663Rhizomagastrodiae_C368-T01_good_19.100
SRR6049664Rhizomagastrodiae_C368-T10_good_111.520
SRR6049665Rhizomagastrodiae_C368-T10_good_111.520
SRP279888GastroGastrodia elata tuber 14.71
JuvenJuvenile tuber17.71
Mother_GastroMother tuber of Gastrodia elata 5.62
Mother_JuvenMother tuber of Juvenile 13.09