Detail information of GWHGAAEX008359/evm.TU.scaffold_215.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1721 | 1.00E-22 | FOG: Zn-finger |
| nr | gi|695041042|ref|XP_009408118.1| | 1.87E-31 | PREDICTED: zinc finger protein ZAT9-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9M202|ZAT9_ARATH | 3.00E-23 | Zinc finger protein ZAT9 |
| trEMBL | tr|M0TCT2|M0TCT2_MUSAM | 3.00E-34 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P34890_001} |
| TAIR | AT3G60580 | 1.00E-22 | C2H2-like zinc finger protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000214 | 859710 | 861223 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008359
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 | C2H2_EAR_family C2H2_EAR_family GO:0000786 nucleosome GOslim:cellular_component GO:0003677 DNA binding GOslim:molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function GO:0003993 acid phosphatase activity GOslim:molecular_function GO:0004190 aspartic-type endopeptidase activity GOslim:molecular_function GO:0004252 serine-type endopeptidase activity GOslim:molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function GO:0004601 peroxidase activity GOslim:molecular_function GO:0004672 protein kinase activity GOslim:molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor GOslim:molecular_function GO:0004857 enzyme inhibitor activity GOslim:molecular_function GO:0005384 manganese ion transmembrane transporter activity GOslim:molecular_function GO:0005507 copper ion binding GOslim:molecular_function GO:0005524 ATP binding GOslim:molecular_function GO:0005576 extracellular region GOslim:cellular_component GO:0005634 nucleus GOslim:cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex GOslim:cellular_component GO:0005975 carbohydrate metabolic process GOslim:biological_process GO:0006270 DNA replication initiation GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006468 protein phosphorylation GOslim:biological_process GO:0006508 proteolysis GOslim:biological_process GO:0006979 response to oxidative stress GOslim:biological_process GO:0008236 serine-type peptidase activity GOslim:molecular_function GO:0008271 secondary active sulfate transmembrane transporter activity GOslim:molecular_function GO:0008272 sulfate transport GOslim:biological_process GO:0009055 electron carrier activity GOslim:molecular_function GO:0010427 abscisic acid binding GOslim:molecular_function GO:0015116 sulfate transmembrane transporter activity GOslim:molecular_function GO:0015267 channel activity GOslim:molecular_function GO:0015297 antiporter activity GOslim:molecular_function GO:0016020 membrane GOslim:cellular_component GO:0016491 oxidoreductase activity GOslim:molecular_function GO:0016788 hydrolase activity, acting on ester bonds GOslim:molecular_function GO:0016853 isomerase activity GOslim:molecular_function GO:0016887 ATPase activity GOslim:molecular_function GO:0020037 heme binding GOslim:molecular_function GO:0030026 cellular manganese ion homeostasis GOslim:biological_process GO:0030246 carbohydrate binding GOslim:molecular_function GO:0038023 signaling receptor activity GOslim:molecular_function GO:0042555 MCM complex GOslim:cellular_component GO:0042626 ATPase activity, coupled to transmembrane movement of substances GOslim:molecular_function GO:0042744 hydrogen peroxide catabolic process GOslim:biological_process GO:0042910 xenobiotic transporter activity GOslim:molecular_function GO:0043565 sequence-specific DNA binding GOslim:molecular_function GO:0046982 protein heterodimerization activity GOslim:molecular_function GO:0048038 quinone binding GOslim:molecular_function GO:0050660 flavin adenine dinucleotide binding GOslim:molecular_function GO:0055085 transmembrane transport GOslim:biological_process GO:0055114 oxidation-reduction process GOslim:biological_process GO:0070008 serine-type exopeptidase activity GOslim:molecular_function GO:0098599 palmitoyl hydrolase activity GOslim:molecular_function map00062 Fatty acid elongation map00904 Diterpenoid biosynthesis map00940 Phenylpropanoid biosynthesis map01100 Metabolic pathways map01110 Biosynthesis of secondary metabolites map02010 ABC transporters map04614 Renin-angiotensin system map04976 Bile secretion Protein Kinases RLK-Pelle_LRR-III Family Protein Kinases RLK-Pelle_LRR-III Family Protein Kinases RLK-Pelle_LRR-XIV Family Protein Kinases RLK-Pelle_LRR-XIV Family Transcription factor AP2/ERF-AP2 Family Transcription factor AP2/ERF-AP2 Family Transcription factor C2H2 Family Transcription factor C2H2 Family Transcription factor GRAS Family Transcription factor GRAS Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13912.5 | zf-C2H2_6 | 4 | 26 | 1.60E-05 |
| PF13912.5 | zf-C2H2_6 | 183 | 208 | 2.70E-11 |
| PF13912.5 | zf-C2H2_6 | 232 | 254 | 4.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.780 |
| SRR2545915 | Juvenile tuber | 1.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.880 |
| SRR5643514 | five period of Gastrodia elata | 7.740 | |
| SRR5643515 | five period of Gastrodia elata | 3.130 | |
| SRR5643524 | five period of Gastrodia elata | 3.640 | |
| SRR5643525 | five period of Gastrodia elata | 1.780 | |
| SRR5643528 | five period of Gastrodia elata | 1.420 | |
| SRR5643658 | five period of Gastrodia elata | 1.940 | |
| SRR5643659 | five period of Gastrodia elata | 0.710 | |
| SRR5643660 | five period of Gastrodia elata | 0.340 | |
| SRR5643661 | five period of Gastrodia elata | 1.280 | |
| SRR5643662 | five period of Gastrodia elata | 1.500 | |
| SRR5643663 | five period of Gastrodia elata | 0.670 | |
| SRR5643664 | five period of Gastrodia elata | 1.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.010 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.93 |
| Juven | Juvenile tuber | 1.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.10 | |
| Mother_Juven | Mother tuber of Juvenile | 1.44 |