Detail information of GWHGAAEX008132/evm.TU.scaffold_21.166


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|17230693|ref|NP_487241.1|4.00E-89Mg-protoporphyrin IX methyl transferase [Nostoc sp. PCC 7120]
KOGKOG12703.00E-108Methyltransferases
nrgi|731369094|ref|XP_010696441.1|2.53E-117PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Beta vulgaris subsp. vulgaris]
Swissprottr|Q9SW18|CHLM_ARATH8.00E-109Magnesium protoporphyrin IX methyltransferase, chloroplastic (Precursor)
trEMBLtr|A0A067EBM6|A0A067EBM6_CITSI2.00E-115Uncharacterized protein {ECO:0000313|EMBL:KDO51265.1}
TAIRAT4G250803.00E-108magnesium-protoporphyrin IX methyltransferase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002246818804683257+
Transcript Sequence

Network for GWHGAAEX008132

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07109.10Mg-por_mtran_C2263219.60E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03428bchM, chlM Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0046406Molecular Functionmagnesium protoporphyrin IX methyltransferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.700
SRR2545915Juvenile tuber5.500
SRP108465SRR5643513five period of Gastrodia elata9.630
SRR5643514five period of Gastrodia elata8.700
SRR5643515five period of Gastrodia elata9.430
SRR5643524five period of Gastrodia elata9.540
SRR5643525five period of Gastrodia elata39.610
SRR5643528five period of Gastrodia elata33.710
SRR5643658five period of Gastrodia elata37.590
SRR5643659five period of Gastrodia elata16.050
SRR5643660five period of Gastrodia elata20.400
SRR5643661five period of Gastrodia elata17.580
SRR5643662five period of Gastrodia elata31.290
SRR5643663five period of Gastrodia elata30.390
SRR5643664five period of Gastrodia elata32.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.130
SRR6049655Rhizomagastrodiae_C368-T10_good_17.430
SRR6049656Rhizomagastrodiae_C368-T07_good_110.030
SRR6049657Rhizomagastrodiae_C368-T07_good_19.920
SRR6049658Rhizomagastrodiae_C368-T04_good_115.310
SRR6049659Rhizomagastrodiae_C368-T04_good_115.770
SRR6049660Rhizomagastrodiae_C368-T01_good_19.250
SRR6049661Rhizomagastrodiae_C368-T04_good_110.280
SRR6049662Rhizomagastrodiae_C368-T01_good_111.310
SRR6049663Rhizomagastrodiae_C368-T01_good_16.140
SRR6049664Rhizomagastrodiae_C368-T10_good_19.330
SRR6049665Rhizomagastrodiae_C368-T10_good_19.330
SRP279888GastroGastrodia elata tuber 45.64
JuvenJuvenile tuber7.90
Mother_GastroMother tuber of Gastrodia elata 15.84
Mother_JuvenMother tuber of Juvenile 9.65