Detail information of GWHGAAEX007987/evm.TU.scaffold_209.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428313434|ref|YP_007124411.1|1.00E-08glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit B [Microcoleus sp. PCC 7113]
KOGKOG24382.00E-12Glutamyl-tRNA amidotransferase subunit B
nrgi|586760953|ref|XP_006854350.1|4.64E-15hypothetical protein AMTR_s00039p00150510 [Amborella trichopoda]
Swissprottr|Q2R2Z0|GATB_ORYSJ2.00E-15Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000255|HAMAP-Rule:MF_03147} (Precursor)
trEMBLtr|U5D321|U5D321_AMBTC2.00E-15Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000256|HAMAP-Rule:MF_03147}
TAIRAT1G485202.00E-12GLU-ADT subunit B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000207904320910076-
Transcript Sequence

Network for GWHGAAEX007987

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4AP2/ERF-ERF_EAR_family AP2/ERF-ERF_EAR_family
GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0016491 oxidoreductase activity GOslim:molecular_function
GO:0016758 transferase activity, transferring hexosyl groups GOslim:molecular_function
GO:0043565 sequence-specific DNA binding GOslim:molecular_function
map00561 Glycerolipid metabolism
map04923 Regulation of lipolysis in adipocytes
Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family
Transcription factor LOB Family Transcription factor LOB Family
Transcription factor MYB Family Transcription factor MYB Family
Transcription factor NAC Family Transcription factor NAC Family
Transcription factor Tify Family Transcription factor Tify Family
Transcription factor WRKY Family Transcription factor WRKY Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02637.17GatB_Yqey26861.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02434gatB, PET112 Metabolic pathways map01100
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0016884Molecular Functioncarbon-nitrogen ligase activity, with glutamine as amido-N-donor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata2.790
SRR5643514five period of Gastrodia elata4.020
SRR5643515five period of Gastrodia elata2.710
SRR5643524five period of Gastrodia elata3.540
SRR5643525five period of Gastrodia elata2.690
SRR5643528five period of Gastrodia elata2.000
SRR5643658five period of Gastrodia elata2.130
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.840
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.640
SRR6049655Rhizomagastrodiae_C368-T10_good_11.830
SRR6049656Rhizomagastrodiae_C368-T07_good_10.620
SRR6049657Rhizomagastrodiae_C368-T07_good_10.560
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.360
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.160
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_11.330
SRR6049665Rhizomagastrodiae_C368-T10_good_11.330
SRP279888GastroGastrodia elata tuber 0.71
JuvenJuvenile tuber2.50
Mother_GastroMother tuber of Gastrodia elata 5.10
Mother_JuvenMother tuber of Juvenile 6.18