Detail information of GWHGAAEX007896/evm.TU.scaffold_207.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|310819638|ref|YP_003951996.1|6.00E-101alpha-amylase [Stigmatella aurantiaca DW4/3-1]
KOGKOG04710Alpha-amylase
nrgi|672112936|ref|XP_008808375.1|0PREDICTED: alpha-amylase 3, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprottr|Q94A41|AMY3_ARATH0Alpha-amylase 3, chloroplastic (Precursor)
trEMBLtr|M0TMG7|M0TMG7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P04140_001}
TAIRAT1G69830_20Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000203554716577569+
Transcript Sequence

Network for GWHGAAEX007896

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1GO:0003677 DNA binding GOslim:molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function
GO:0004857 enzyme inhibitor activity GOslim:molecular_function
GO:0005975 carbohydrate metabolic process GOslim:biological_process
GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process
GO:0006629 lipid metabolic process GOslim:biological_process
GO:0008081 phosphoric diester hydrolase activity GOslim:molecular_function
GO:0008234 cysteine-type peptidase activity GOslim:molecular_function
GO:0009055 electron carrier activity GOslim:molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function
GO:0015035 protein disulfide oxidoreductase activity GOslim:molecular_function
GO:0015267 channel activity GOslim:molecular_function
GO:0016020 membrane GOslim:cellular_component
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function
GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function
GO:0046556 alpha-L-arabinofuranosidase activity GOslim:molecular_function
GO:0046983 protein dimerization activity GOslim:molecular_function
Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family
Transcription factor C2C2-Dof Family Transcription factor C2C2-Dof Family
Transcription factor NAC Family Transcription factor NAC Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00128.23Alpha-amylase5488325.80E-18
PF07821.11Alpha-amyl_C28539104.20E-23
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM45

KEGG pathway

KO Enzyme pathway mapID
K01176AMY, amyA, malS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Pancreatic secretionmap04972
Carbohydrate digestion and absorptionmap04973

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0005509Molecular Functioncalcium ion binding
GO:0004556Molecular Functionalpha-amylase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms216.290
SRR2545915Juvenile tuber98.350
SRP108465SRR5643513five period of Gastrodia elata86.380
SRR5643514five period of Gastrodia elata92.840
SRR5643515five period of Gastrodia elata92.810
SRR5643524five period of Gastrodia elata75.160
SRR5643525five period of Gastrodia elata440.090
SRR5643528five period of Gastrodia elata384.760
SRR5643658five period of Gastrodia elata683.460
SRR5643659five period of Gastrodia elata11.580
SRR5643660five period of Gastrodia elata19.150
SRR5643661five period of Gastrodia elata12.960
SRR5643662five period of Gastrodia elata41.050
SRR5643663five period of Gastrodia elata16.890
SRR5643664five period of Gastrodia elata17.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_184.850
SRR6049655Rhizomagastrodiae_C368-T10_good_139.360
SRR6049656Rhizomagastrodiae_C368-T07_good_178.760
SRR6049657Rhizomagastrodiae_C368-T07_good_1198.190
SRR6049658Rhizomagastrodiae_C368-T04_good_1399.050
SRR6049659Rhizomagastrodiae_C368-T04_good_1556.230
SRR6049660Rhizomagastrodiae_C368-T01_good_1186.190
SRR6049661Rhizomagastrodiae_C368-T04_good_1324.850
SRR6049662Rhizomagastrodiae_C368-T01_good_144.270
SRR6049663Rhizomagastrodiae_C368-T01_good_1114.790
SRR6049664Rhizomagastrodiae_C368-T10_good_129.580
SRR6049665Rhizomagastrodiae_C368-T10_good_129.580
SRP279888GastroGastrodia elata tuber 29.41
JuvenJuvenile tuber10.74
Mother_GastroMother tuber of Gastrodia elata 343.11
Mother_JuvenMother tuber of Juvenile 333.79