Gene detail

Detail information of GWHGAAEX007279/evm.TU.scaffold_2.59

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2002	6.00E-35	TPR-containing nuclear phosphoprotein that regulates K(+) uptake
nr	gi\|743881249\|ref\|XP_010908854.1\|	1.90E-50	PREDICTED: RNA polymerase-associated protein CTR9 homolog [Elaeis guineensis]
trEMBL	tr\|W5GM63\|W5GM63_WHEAT	3.00E-50	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_6BL_B926FE5D6.1} (Fragment)
TAIR	AT2G06210	6.00E-35	binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	2230561	2233916	-

Transcript Sequence
>GWHTAAEX007279 CGCATTGTAAATCTAGTGCACTTAAGTTCCATAAAGTAGAATATAACACGGTTTTATTGTATAATTAAATCCTGAAGTATATTTAGAACATGCCTAAAAACTACAAAGGGTGGAGGTTATCATTATAAAGTAACACCAGTTATTGCTGCACAGCCACATGAGCTACATGATGAATCTCTCCGGGTTATTTTCTAATGTGCATGGTTCGTACTACAGTCACTGAATTGAAGAATGCAGTTCGTGTGTTCAGCCAACTTTCTGCAGCTTCTAGCATCCATTCTCATGGATTTGATGAGAAGAAGATACGGACTCATGTGGAATATTGCAAATTTTTGCTTAATTCAGCTAGGGAACATTGTGATCAAGCTGCACTTGAAGAACAGCAGAATCTACAGAGGCTAGAAGTTGCTCGTCAGGTATCCTTAGCAGAGGAAGCTCGACGGAGAGCTGATGAACAGATGAAATATCAGGAGCAATGGAAAAATTACAGCAACACTCCTGGTGGCAAGCGCAAAGATAGGACACCGCTTGAAGGCGAGGATGGCGAAAACAGCGAGAGGAGGAAAGGCGGGAAAATACGAAGGAAGGATAAGAGGCAGGATCAGCATGAGCACGATGCCAACGCGGAGAACGAGCAGGATGACGTTGACGAAGAAGAGGAGGCAAGGCAAACGAGCGGTCACTACGAAGAGGCAGATAGAACGCATGACCATCTGGCCACAGCTGGTCTCGAATATTCTGACGTCGAAGATGATGCGGGAGACTATGCGATTAGCAGGAAGAGAAAGGCGTGGTCAGAATCGGATGAAGAGGATGAAGAAGCGGCGTATAGGGAGCGCGATCCCACCCCTGTTGGATACAGGAACTCTCCTGGAAGTGACGACGACGGCAGAGGCAGTATGAACAAAGAAGAAGAGCATTCCTGA

Network for GWHGAAEX007279

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module11	CYTOCHROME_P498_Family CYTOCHROME_P498_Family CYTOCHROME_P526_Family CYTOCHROME_P526_Family GO:0000387 spliceosomal snRNP assembly GOslim:biological_process GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function GO:0005681 spliceosomal complex GOslim:cellular_component GO:0006464 cellular protein modification process GOslim:biological_process GO:0006662 glycerol ether metabolic process GOslim:biological_process GO:0015995 chlorophyll biosynthetic process GOslim:biological_process GO:0034968 histone lysine methylation GOslim:biological_process GO:0039694 viral RNA genome replication GOslim:biological_process GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function map00780 Biotin metabolism map03010 Ribosome Transcription factor GRF Family Transcription factor GRF Family Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Module ID

Function Annotation

Module11

CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.430
SRP064423	SRR2545915	Juvenile tuber	5.270
SRP108465	SRR5643513	five period of Gastrodia elata	2.390
	SRR5643514	five period of Gastrodia elata	2.610
	SRR5643515	five period of Gastrodia elata	2.780
	SRR5643524	five period of Gastrodia elata	2.300
	SRR5643525	five period of Gastrodia elata	3.070
	SRR5643528	five period of Gastrodia elata	3.620
	SRR5643658	five period of Gastrodia elata	2.200
	SRR5643659	five period of Gastrodia elata	6.240
	SRR5643660	five period of Gastrodia elata	4.520
	SRR5643661	five period of Gastrodia elata	6.480
	SRR5643662	five period of Gastrodia elata	6.050
	SRR5643663	five period of Gastrodia elata	5.630
	SRR5643664	five period of Gastrodia elata	7.160
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.410
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.680
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.810
SRP279888	Gastro	Gastrodia elata tuber	12.02
	Juven	Juvenile tuber	4.47
	Mother_Gastro	Mother tuber of Gastrodia elata	7.81
	Mother_Juven	Mother tuber of Juvenile	4.35