Detail information of GWHGAAEX006736/evm.TU.scaffold_19.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17219.00E-105FOG: Zn-finger
nrgi|565488311|ref|XP_006301795.1|1.82E-124hypothetical protein CARUB_v10022259mg [Capsella rubella]
Swissprottr|Q9STM3|REF6_ARATH2.00E-06Lysine-specific demethylase REF6
trEMBLtr|R0IDC6|R0IDC6_9BRAS7.00E-125Uncharacterized protein {ECO:0000313|EMBL:EOA34693.1}
TAIRAT1G720509.00E-105transcription factor IIIA

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002013163091325610+
Transcript Sequence

Network for GWHGAAEX006736

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00096.25zf-C2H21962200.0011
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms77.440
SRR2545915Juvenile tuber34.960
SRP108465SRR5643513five period of Gastrodia elata30.280
SRR5643514five period of Gastrodia elata22.680
SRR5643515five period of Gastrodia elata22.480
SRR5643524five period of Gastrodia elata20.970
SRR5643525five period of Gastrodia elata38.510
SRR5643528five period of Gastrodia elata32.250
SRR5643658five period of Gastrodia elata39.710
SRR5643659five period of Gastrodia elata33.280
SRR5643660five period of Gastrodia elata31.680
SRR5643661five period of Gastrodia elata26.940
SRR5643662five period of Gastrodia elata36.560
SRR5643663five period of Gastrodia elata48.960
SRR5643664five period of Gastrodia elata46.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_154.410
SRR6049655Rhizomagastrodiae_C368-T10_good_126.290
SRR6049656Rhizomagastrodiae_C368-T07_good_134.150
SRR6049657Rhizomagastrodiae_C368-T07_good_176.500
SRR6049658Rhizomagastrodiae_C368-T04_good_153.730
SRR6049659Rhizomagastrodiae_C368-T04_good_164.720
SRR6049660Rhizomagastrodiae_C368-T01_good_156.670
SRR6049661Rhizomagastrodiae_C368-T04_good_155.680
SRR6049662Rhizomagastrodiae_C368-T01_good_129.340
SRR6049663Rhizomagastrodiae_C368-T01_good_134.640
SRR6049664Rhizomagastrodiae_C368-T10_good_122.080
SRR6049665Rhizomagastrodiae_C368-T10_good_122.080
SRP279888GastroGastrodia elata tuber 85.55
JuvenJuvenile tuber87.91
Mother_GastroMother tuber of Gastrodia elata 46.07
Mother_JuvenMother tuber of Juvenile 84.81