Detail information of GWHGAAEX006591/evm.TU.scaffold_187.31


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262193487|ref|YP_003264696.1|6.00E-25MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOGKOG13479.00E-142Uncharacterized membrane protein, predicted efflux pump
nrgi|720011982|ref|XP_010259729.1|1.56E-162PREDICTED: MATE efflux family protein 5 [Nelumbo nucifera]
Swissprottr|Q8GXM8|MATE7_ARATH1.00E-51MATE efflux family protein 7
trEMBLtr|B9RT81|B9RT81_RICCO2.00E-159MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT5G491309.00E-142MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000184729915731689-
Transcript Sequence

Network for GWHGAAEX006591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE472081.10E-27
PF01554.17MatE2734344.80E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0015297Molecular Functionantiporter activity
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.170
SRR2545915Juvenile tuber0.200
SRP108465SRR5643513five period of Gastrodia elata0.320
SRR5643514five period of Gastrodia elata0.200
SRR5643515five period of Gastrodia elata0.380
SRR5643524five period of Gastrodia elata0.040
SRR5643525five period of Gastrodia elata0.610
SRR5643528five period of Gastrodia elata0.860
SRR5643658five period of Gastrodia elata1.100
SRR5643659five period of Gastrodia elata1.070
SRR5643660five period of Gastrodia elata1.240
SRR5643661five period of Gastrodia elata1.640
SRR5643662five period of Gastrodia elata1.760
SRR5643663five period of Gastrodia elata1.260
SRR5643664five period of Gastrodia elata1.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.620
SRR6049655Rhizomagastrodiae_C368-T10_good_10.530
SRR6049656Rhizomagastrodiae_C368-T07_good_10.830
SRR6049657Rhizomagastrodiae_C368-T07_good_10.500
SRR6049658Rhizomagastrodiae_C368-T04_good_11.950
SRR6049659Rhizomagastrodiae_C368-T04_good_10.710
SRR6049660Rhizomagastrodiae_C368-T01_good_10.750
SRR6049661Rhizomagastrodiae_C368-T04_good_11.170
SRR6049662Rhizomagastrodiae_C368-T01_good_10.690
SRR6049663Rhizomagastrodiae_C368-T01_good_10.330
SRR6049664Rhizomagastrodiae_C368-T10_good_10.400
SRR6049665Rhizomagastrodiae_C368-T10_good_10.400
SRP279888GastroGastrodia elata tuber 3.28
JuvenJuvenile tuber1.01
Mother_GastroMother tuber of Gastrodia elata 1.14
Mother_JuvenMother tuber of Juvenile 1.02