Detail information of GWHGAAEX006008/evm.TU.scaffold_176.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27702.00E-09Aminomethyl transferase
nrgi|720073199|ref|XP_010278627.1|1.11E-09PREDICTED: aminomethyltransferase, mitochondrial-like [Nelumbo nucifera]
Swissprottr|P54260|GCST_SOLTU1.00E-10Aminomethyltransferase, mitochondrial (Precursor)
trEMBLtr|E5GC65|E5GC65_CUCME7.00E-10Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}
TAIRAT1G118602.00E-09Glycine cleavage T-protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000183427878428681-
Transcript Sequence

Network for GWHGAAEX006008

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00605gcvT, AMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Pyrimidine metabolismmap00240
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.100
SRR2545915Juvenile tuber0.790
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata1.020
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata2.730
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata1.010
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata2.220
SRR5643661five period of Gastrodia elata3.220
SRR5643662five period of Gastrodia elata1.220
SRR5643663five period of Gastrodia elata3.310
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_111.420
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_11.190
SRR6049665Rhizomagastrodiae_C368-T10_good_11.190
SRP279888GastroGastrodia elata tuber 6.14
JuvenJuvenile tuber1.25
Mother_GastroMother tuber of Gastrodia elata 0.98
Mother_JuvenMother tuber of Juvenile 6.00