Detail information of GWHGAAEX005192/evm.TU.scaffold_16.149


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30363.00E-41Protein involved in cell differentiation/sexual development
nrgi|695010621|ref|XP_009391985.1|4.11E-135PREDICTED: cell differentiation protein RCD1 homolog [Musa acuminata subsp. malaccensis]
trEMBLtr|W1PAZ5|W1PAZ5_AMBTC1.00E-108Uncharacterized protein {ECO:0000313|EMBL:ERN05118.1}
TAIRAT3G208003.00E-41Cell differentiation, Rcd1-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002445478714630244-
Transcript Sequence

Network for GWHGAAEX005192

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04078.12Rcd1643292.00E-61
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyRcd1-like

KEGG pathway

KO Enzyme pathway mapID
K12606RCD1, CNOT9, CAF40 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.100
SRR2545915Juvenile tuber2.820
SRP108465SRR5643513five period of Gastrodia elata2.750
SRR5643514five period of Gastrodia elata2.300
SRR5643515five period of Gastrodia elata2.070
SRR5643524five period of Gastrodia elata2.370
SRR5643525five period of Gastrodia elata1.230
SRR5643528five period of Gastrodia elata0.860
SRR5643658five period of Gastrodia elata1.090
SRR5643659five period of Gastrodia elata2.250
SRR5643660five period of Gastrodia elata1.930
SRR5643661five period of Gastrodia elata1.680
SRR5643662five period of Gastrodia elata1.980
SRR5643663five period of Gastrodia elata1.630
SRR5643664five period of Gastrodia elata2.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.600
SRR6049655Rhizomagastrodiae_C368-T10_good_13.040
SRR6049656Rhizomagastrodiae_C368-T07_good_12.110
SRR6049657Rhizomagastrodiae_C368-T07_good_11.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.840
SRR6049659Rhizomagastrodiae_C368-T04_good_10.630
SRR6049660Rhizomagastrodiae_C368-T01_good_11.860
SRR6049661Rhizomagastrodiae_C368-T04_good_11.380
SRR6049662Rhizomagastrodiae_C368-T01_good_11.100
SRR6049663Rhizomagastrodiae_C368-T01_good_11.370
SRR6049664Rhizomagastrodiae_C368-T10_good_11.940
SRR6049665Rhizomagastrodiae_C368-T10_good_11.940
SRP279888GastroGastrodia elata tuber 4.48
JuvenJuvenile tuber2.24
Mother_GastroMother tuber of Gastrodia elata 1.72
Mother_JuvenMother tuber of Juvenile 1.83