Detail information of GWHGAAEX005159/evm.TU.scaffold_16.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1721 | 2.00E-34 | FOG: Zn-finger |
| nr | gi|743826079|ref|XP_010933179.1| | 1.99E-42 | PREDICTED: zinc finger protein ZAT5-like [Elaeis guineensis] |
| Swissprot | tr|Q681X4|ZAT5_ARATH | 6.00E-35 | Zinc finger protein ZAT5 |
| trEMBL | tr|M0U769|M0U769_MUSAM | 7.00E-41 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07580_001} |
| TAIR | AT2G28200 | 2.00E-34 | C2H2-type zinc finger family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 3258234 | 3259483 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005159
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 | GO:0003677 DNA binding GOslim:molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GOslim:molecular_function GO:0004857 enzyme inhibitor activity GOslim:molecular_function GO:0005975 carbohydrate metabolic process GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006629 lipid metabolic process GOslim:biological_process GO:0008081 phosphoric diester hydrolase activity GOslim:molecular_function GO:0008234 cysteine-type peptidase activity GOslim:molecular_function GO:0009055 electron carrier activity GOslim:molecular_function GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function GO:0015035 protein disulfide oxidoreductase activity GOslim:molecular_function GO:0015267 channel activity GOslim:molecular_function GO:0016020 membrane GOslim:cellular_component GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen GOslim:molecular_function GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function GO:0046556 alpha-L-arabinofuranosidase activity GOslim:molecular_function GO:0046983 protein dimerization activity GOslim:molecular_function Transcription factor AUX/IAA Family Transcription factor AUX/IAA Family Transcription factor C2C2-Dof Family Transcription factor C2C2-Dof Family Transcription factor NAC Family Transcription factor NAC Family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13912.5 | zf-C2H2_6 | 43 | 67 | 3.60E-11 |
| PF13912.5 | zf-C2H2_6 | 88 | 112 | 6.60E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.150 |
| SRR2545915 | Juvenile tuber | 0.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.430 |
| SRR5643514 | five period of Gastrodia elata | 1.120 | |
| SRR5643515 | five period of Gastrodia elata | 1.590 | |
| SRR5643524 | five period of Gastrodia elata | 0.280 | |
| SRR5643525 | five period of Gastrodia elata | 16.960 | |
| SRR5643528 | five period of Gastrodia elata | 10.320 | |
| SRR5643658 | five period of Gastrodia elata | 10.620 | |
| SRR5643659 | five period of Gastrodia elata | 0.780 | |
| SRR5643660 | five period of Gastrodia elata | 0.670 | |
| SRR5643661 | five period of Gastrodia elata | 0.490 | |
| SRR5643662 | five period of Gastrodia elata | 0.910 | |
| SRR5643663 | five period of Gastrodia elata | 0.560 | |
| SRR5643664 | five period of Gastrodia elata | 3.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.430 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.77 |
| Juven | Juvenile tuber | 0.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.78 | |
| Mother_Juven | Mother tuber of Juvenile | 0.78 |