Detail information of GWHGAAEX002719/evm.TU.scaffold_123.31


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG07243.00E-33Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains
nrgi|672144077|ref|XP_008795931.1|4.84E-37PREDICTED: protein RADIALIS-like 3 [Phoenix dactylifera]
Swissprottr|Q1A173|RADL6_ARATH9.00E-34Protein RADIALIS-like 6
trEMBLtr|E0CQD3|E0CQD3_VITVI7.00E-37Putative uncharacterized protein {ECO:0000313|EMBL:CBI19701.3}
TAIRAT1G752503.00E-33RAD-like 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012112893541290642-
Transcript Sequence

Network for GWHGAAEX002719

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.30Myb_DNA-binding9531.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.680
SRR2545915Juvenile tuber4.080
SRP108465SRR5643513five period of Gastrodia elata7.030
SRR5643514five period of Gastrodia elata29.420
SRR5643515five period of Gastrodia elata10.450
SRR5643524five period of Gastrodia elata18.230
SRR5643525five period of Gastrodia elata15.140
SRR5643528five period of Gastrodia elata10.440
SRR5643658five period of Gastrodia elata32.280
SRR5643659five period of Gastrodia elata13.430
SRR5643660five period of Gastrodia elata5.230
SRR5643661five period of Gastrodia elata7.740
SRR5643662five period of Gastrodia elata4.770
SRR5643663five period of Gastrodia elata13.280
SRR5643664five period of Gastrodia elata10.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.530
SRR6049655Rhizomagastrodiae_C368-T10_good_116.660
SRR6049656Rhizomagastrodiae_C368-T07_good_117.140
SRR6049657Rhizomagastrodiae_C368-T07_good_112.880
SRR6049658Rhizomagastrodiae_C368-T04_good_112.020
SRR6049659Rhizomagastrodiae_C368-T04_good_18.670
SRR6049660Rhizomagastrodiae_C368-T01_good_117.250
SRR6049661Rhizomagastrodiae_C368-T04_good_19.940
SRR6049662Rhizomagastrodiae_C368-T01_good_112.880
SRR6049663Rhizomagastrodiae_C368-T01_good_111.600
SRR6049664Rhizomagastrodiae_C368-T10_good_114.510
SRR6049665Rhizomagastrodiae_C368-T10_good_114.510
SRP279888GastroGastrodia elata tuber 38.95
JuvenJuvenile tuber8.35
Mother_GastroMother tuber of Gastrodia elata 9.08
Mother_JuvenMother tuber of Juvenile 0.33