Detail information of GWHGAAEX002364/evm.TU.scaffold_12.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1721 | 9.00E-20 | FOG: Zn-finger |
| nr | gi|672114311|ref|XP_008776407.1| | 7.76E-24 | PREDICTED: zinc finger protein ZAT11-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SLD4|ZAT11_ARATH | 3.00E-20 | Zinc finger protein ZAT11 |
| trEMBL | tr|Q2HU63|Q2HU63_MEDTR | 3.00E-23 | Zinc finger, C2H2-type {ECO:0000313|EMBL:ABD32282.1} |
| TAIR | AT2G37430 | 9.00E-20 | C2H2 and C2HC zinc fingers superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000009 | 5489123 | 5490444 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002364
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 | CYTOCHROME_P451_Family CYTOCHROME_P451_Family CYTOCHROME_P504_Family CYTOCHROME_P504_Family Glycoside Hydrolases 81 Glycoside Hydrolases 81 GO:0003677 DNA binding GOslim:molecular_function GO:0003680 AT DNA binding GOslim:molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GOslim:molecular_function GO:0003872 6-phosphofructokinase activity GOslim:molecular_function GO:0004385 guanylate kinase activity GOslim:molecular_function GO:0004672 protein kinase activity GOslim:molecular_function GO:0004842 ubiquitin-protein transferase activity GOslim:molecular_function GO:0005509 calcium ion binding GOslim:molecular_function GO:0006002 fructose 6-phosphate metabolic process GOslim:biological_process GO:0006163 purine nucleotide metabolic process GOslim:biological_process GO:0006355 regulation of transcription, DNA-templated GOslim:biological_process GO:0006468 protein phosphorylation GOslim:biological_process GO:0006839 mitochondrial transport GOslim:biological_process GO:0009733 response to auxin GOslim:biological_process GO:0016567 protein ubiquitination GOslim:biological_process GO:0030247 polysaccharide binding GOslim:molecular_function GO:0030599 pectinesterase activity GOslim:molecular_function GO:0031966 mitochondrial membrane GOslim:cellular_component GO:0042545 cell wall modification GOslim:biological_process GO:0043169 cation binding GOslim:molecular_function map04016 MAPK signaling pathway - plant map04075 Plant hormone signal transduction map04626 Plant-pathogen interaction MYB_EAR_family MYB_EAR_family Protein Kinases RLK-Pelle_CrRLK1L-1 Family Protein Kinases RLK-Pelle_CrRLK1L-1 Family Protein Kinases RLK-Pelle_LRR-XII-1 Family Protein Kinases RLK-Pelle_LRR-XII-1 Family Protein Kinases RLK-Pelle_WAK_LRK10L-1 Family Protein Kinases RLK-Pelle_WAK_LRK10L-1 Family Protein Kinases STE_STE7 Family Protein Kinases STE_STE7 Family Transcription factor AP2/ERF-ERF Family Transcription factor AP2/ERF-ERF Family Transcription factor bHLH Family Transcription factor bHLH Family Ubiquitin_E3 RING_U-box_family Ubiquitin_E3 RING_U-box_family |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13912.5 | zf-C2H2_6 | 12 | 34 | 4.70E-10 |
| PF13912.5 | zf-C2H2_6 | 50 | 74 | 4.50E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.810 |
| SRR2545915 | Juvenile tuber | 7.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.600 |
| SRR5643514 | five period of Gastrodia elata | 8.090 | |
| SRR5643515 | five period of Gastrodia elata | 65.520 | |
| SRR5643524 | five period of Gastrodia elata | 8.540 | |
| SRR5643525 | five period of Gastrodia elata | 189.500 | |
| SRR5643528 | five period of Gastrodia elata | 80.180 | |
| SRR5643658 | five period of Gastrodia elata | 77.380 | |
| SRR5643659 | five period of Gastrodia elata | 37.880 | |
| SRR5643660 | five period of Gastrodia elata | 4.250 | |
| SRR5643661 | five period of Gastrodia elata | 6.520 | |
| SRR5643662 | five period of Gastrodia elata | 31.820 | |
| SRR5643663 | five period of Gastrodia elata | 16.490 | |
| SRR5643664 | five period of Gastrodia elata | 189.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.310 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.69 |
| Juven | Juvenile tuber | 0.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 74.76 | |
| Mother_Juven | Mother tuber of Juvenile | 27.91 |