Detail information of GWHGAAEX000972/evm.TU.scaffold_103.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695003500|ref|XP_009385756.1|5.49E-45PREDICTED: transcription factor bHLH113-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LT67|BH113_ARATH4.00E-31Transcription factor bHLH113
trEMBLtr|M0S5H2|M0S5H2_MUSAM2.00E-45Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P05810_001}
TAIRAT3G195001.00E-30basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010427255902726272+
Transcript Sequence

Network for GWHGAAEX000972

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.140
SRR2545915Juvenile tuber78.620
SRP108465SRR5643513five period of Gastrodia elata46.080
SRR5643514five period of Gastrodia elata54.100
SRR5643515five period of Gastrodia elata48.910
SRR5643524five period of Gastrodia elata40.600
SRR5643525five period of Gastrodia elata44.620
SRR5643528five period of Gastrodia elata42.660
SRR5643658five period of Gastrodia elata41.410
SRR5643659five period of Gastrodia elata70.030
SRR5643660five period of Gastrodia elata68.560
SRR5643661five period of Gastrodia elata76.260
SRR5643662five period of Gastrodia elata83.110
SRR5643663five period of Gastrodia elata89.300
SRR5643664five period of Gastrodia elata59.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_184.420
SRR6049655Rhizomagastrodiae_C368-T10_good_1130.860
SRR6049656Rhizomagastrodiae_C368-T07_good_175.040
SRR6049657Rhizomagastrodiae_C368-T07_good_171.640
SRR6049658Rhizomagastrodiae_C368-T04_good_171.480
SRR6049659Rhizomagastrodiae_C368-T04_good_168.750
SRR6049660Rhizomagastrodiae_C368-T01_good_168.950
SRR6049661Rhizomagastrodiae_C368-T04_good_178.100
SRR6049662Rhizomagastrodiae_C368-T01_good_163.220
SRR6049663Rhizomagastrodiae_C368-T01_good_1105.260
SRR6049664Rhizomagastrodiae_C368-T10_good_1106.520
SRR6049665Rhizomagastrodiae_C368-T10_good_1106.520
SRP279888GastroGastrodia elata tuber 186.56
JuvenJuvenile tuber18.57
Mother_GastroMother tuber of Gastrodia elata 73.82
Mother_JuvenMother tuber of Juvenile 18.59