Detail information of GWHGAAEX000828/evm.TU.scaffold_100.99


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|311350542|gb|ADP92454.1|1.26E-102GIGANTEA 1 [x Doritaenopsis hybrid cultivar]
Swissprottr|Q9AWL7|GIGAN_ORYSJ4.00E-94Protein GIGANTEA
trEMBLtr|E5LAG2|E5LAG2_9ASPA5.00E-103GIGANTEA 1 {ECO:0000313|EMBL:ADP92454.1}
TAIRAT1G227704.00E-73gigantea protein (GI)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009933215233332937-
Transcript Sequence

Network for GWHGAAEX000828

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module11CYTOCHROME_P498_Family CYTOCHROME_P498_Family
CYTOCHROME_P526_Family CYTOCHROME_P526_Family
GO:0000387 spliceosomal snRNP assembly GOslim:biological_process
GO:0003968 RNA-directed RNA polymerase activity GOslim:molecular_function
GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity GOslim:molecular_function
GO:0004869 cysteine-type endopeptidase inhibitor activity GOslim:molecular_function
GO:0005681 spliceosomal complex GOslim:cellular_component
GO:0006464 cellular protein modification process GOslim:biological_process
GO:0006662 glycerol ether metabolic process GOslim:biological_process
GO:0015995 chlorophyll biosynthetic process GOslim:biological_process
GO:0034968 histone lysine methylation GOslim:biological_process
GO:0039694 viral RNA genome replication GOslim:biological_process
GO:0046406 magnesium protoporphyrin IX methyltransferase activity GOslim:molecular_function
map00780 Biotin metabolism
map03010 Ribosome
Transcription factor GRF Family Transcription factor GRF Family
Transcription factor Rcd1-like Family Transcription factor Rcd1-like Family

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12124GI Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.430
SRR2545915Juvenile tuber23.280
SRP108465SRR5643513five period of Gastrodia elata5.740
SRR5643514five period of Gastrodia elata8.590
SRR5643515five period of Gastrodia elata5.570
SRR5643524five period of Gastrodia elata6.060
SRR5643525five period of Gastrodia elata6.190
SRR5643528five period of Gastrodia elata15.300
SRR5643658five period of Gastrodia elata17.650
SRR5643659five period of Gastrodia elata2.410
SRR5643660five period of Gastrodia elata3.480
SRR5643661five period of Gastrodia elata20.280
SRR5643662five period of Gastrodia elata1.710
SRR5643663five period of Gastrodia elata2.280
SRR5643664five period of Gastrodia elata1.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_16.120
SRR6049655Rhizomagastrodiae_C368-T10_good_13.800
SRR6049656Rhizomagastrodiae_C368-T07_good_16.000
SRR6049657Rhizomagastrodiae_C368-T07_good_14.680
SRR6049658Rhizomagastrodiae_C368-T04_good_15.860
SRR6049659Rhizomagastrodiae_C368-T04_good_15.620
SRR6049660Rhizomagastrodiae_C368-T01_good_15.290
SRR6049661Rhizomagastrodiae_C368-T04_good_14.600
SRR6049662Rhizomagastrodiae_C368-T01_good_110.290
SRR6049663Rhizomagastrodiae_C368-T01_good_19.390
SRR6049664Rhizomagastrodiae_C368-T10_good_19.460
SRR6049665Rhizomagastrodiae_C368-T10_good_19.460
SRP279888GastroGastrodia elata tuber 44.79
JuvenJuvenile tuber4.47
Mother_GastroMother tuber of Gastrodia elata 7.38
Mother_JuvenMother tuber of Juvenile 5.63